Gene annotation
Transcriptome id Sobic.005G120600.2,Sobic.005G120600.4,Sobic.005G120600.3
Synonym Sb05g017510, SbSBP10
Functional annotation Highest expression level in embryo (PubMedID : 27501690)
OsSPL19 - SBP-box gene family member, expressed
UniProt C5Y2L5 , A0A120GUV1
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G50570 : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
RAP-DB (Rice) LOC_Os11g30370.1 : OsSPL19 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a014741 , Zm00025a029716 , Zm00025a048156
Brachypodium PNT61614 , PNT61615 , KQJ88495 , KQJ83945 , KQK16095
Barley -
Wheat TraesCS2B02G250900 , TraesCS2A02G232400 , TraesCS2D02G232800 , TraesCS2A02G413900 , TraesCS2B02G432700 , TraesCS2D02G410700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G116500 expressed protein -
2 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
3 Sobic.010G221200 neurochondrin family protein, putative, expressed -
4 Sobic.004G141000 cation transport regulator-like protein 1, putative, expressed -
5 Sobic.002G416150 - -
6 Sobic.010G013500 growth-regulating factor, putative, expressed -
7 Sobic.005G139300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amidase, putative, expressed -
8 Sobic.002G002500 tobamovirus multiplication protein, putative, expressed -
9 Sobic.004G286250 - -
10 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
11 Sobic.002G378600 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
12 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
13 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
14 Sobic.004G248700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
16 Sobic.001G179900 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
17 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
18 Sobic.004G148900 ankyrin, putative, expressed -
19 Sobic.004G057700 zinc-binding protein, putative, expressed -
20 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C


Gene co-expression network
sample Sobic005G120600 Sobic005G120600 Sobic004G116500 Sobic004G116500 Sobic005G120600--Sobic004G116500 Sobic001G268700 Sobic001G268700 Sobic005G120600--Sobic001G268700 Sobic010G221200 Sobic010G221200 Sobic005G120600--Sobic010G221200 Sobic004G141000 Sobic004G141000 Sobic005G120600--Sobic004G141000 Sobic002G416150 Sobic002G416150 Sobic005G120600--Sobic002G416150 Sobic010G013500 Sobic010G013500 Sobic005G120600--Sobic010G013500 Sobic005G139300 Sobic005G139300 Sobic005G120600--Sobic005G139300 Sobic002G002500 Sobic002G002500 Sobic005G120600--Sobic002G002500 Sobic004G286250 Sobic004G286250 Sobic005G120600--Sobic004G286250 Sobic004G116500--Sobic005G120600 Sobic004G116500--Sobic010G221200 Sobic004G248700 Sobic004G248700 Sobic004G116500--Sobic004G248700 Sobic004G116500--Sobic002G416150 Sobic004G116500--Sobic001G268700 Sobic004G289500 Sobic004G289500 Sobic004G116500--Sobic004G289500 Sobic006G269600 Sobic006G269600 Sobic004G116500--Sobic006G269600 Sobic009G155900 Sobic009G155900 Sobic004G116500--Sobic009G155900 Sobic002G050500 Sobic002G050500 Sobic004G116500--Sobic002G050500 Sobic001G268700--Sobic002G050500 Sobic001G268700--Sobic010G221200 Sobic001G268700--Sobic005G120600 Sobic001G268700--Sobic004G116500 Sobic003G107900 Sobic003G107900 Sobic001G268700--Sobic003G107900 Sobic002G223300 Sobic002G223300 Sobic001G268700--Sobic002G223300 Sobic001G372900 Sobic001G372900 Sobic001G268700--Sobic001G372900 Sobic010G063566 Sobic010G063566 Sobic001G268700--Sobic010G063566 Sobic008G100400 Sobic008G100400 Sobic001G268700--Sobic008G100400 Sobic010G221200--Sobic004G116500 Sobic010G221200--Sobic001G268700 Sobic010G221200--Sobic005G120600 Sobic003G102700 Sobic003G102700 Sobic010G221200--Sobic003G102700 Sobic010G221200--Sobic010G013500 Sobic010G221200--Sobic001G372900 Sobic006G084300 Sobic006G084300 Sobic010G221200--Sobic006G084300 Sobic010G221200--Sobic002G416150 Sobic009G028100 Sobic009G028100 Sobic010G221200--Sobic009G028100 Sobic004G141000--Sobic005G120600 Sobic003G400400 Sobic003G400400 Sobic004G141000--Sobic003G400400 Sobic006G107900 Sobic006G107900 Sobic004G141000--Sobic006G107900 Sobic002G391100 Sobic002G391100 Sobic004G141000--Sobic002G391100 Sobic001G017500 Sobic001G017500 Sobic004G141000--Sobic001G017500 Sobic002G118300 Sobic002G118300 Sobic004G141000--Sobic002G118300 Sobic003G363400 Sobic003G363400 Sobic004G141000--Sobic003G363400 Sobic003G236200 Sobic003G236200 Sobic004G141000--Sobic003G236200 Sobic003G283700 Sobic003G283700 Sobic004G141000--Sobic003G283700 Sobic002G416150--Sobic004G116500 Sobic006G088400 Sobic006G088400 Sobic002G416150--Sobic006G088400 Sobic001G264201 Sobic001G264201 Sobic002G416150--Sobic001G264201 Sobic002G416150--Sobic005G120600 Sobic002G416150--Sobic005G139300 Sobic004G353400 Sobic004G353400 Sobic002G416150--Sobic004G353400 Sobic009G224300 Sobic009G224300 Sobic002G416150--Sobic009G224300 Sobic002G416150--Sobic010G221200 Sobic002G416150--Sobic009G155900 Sobic009G000600 Sobic009G000600 Sobic010G013500--Sobic009G000600 Sobic004G199200 Sobic004G199200 Sobic010G013500--Sobic004G199200 Sobic006G022400 Sobic006G022400 Sobic010G013500--Sobic006G022400 Sobic010G013500--Sobic002G223300 Sobic002G284400 Sobic002G284400 Sobic010G013500--Sobic002G284400 Sobic001G290500 Sobic001G290500 Sobic010G013500--Sobic001G290500 Sobic010G013500--Sobic001G372900 Sobic006G281900 Sobic006G281900 Sobic010G013500--Sobic006G281900 Sobic010G013500--Sobic005G120600 Sobic007G050900 Sobic007G050900 Sobic005G139300--Sobic007G050900 Sobic007G053100 Sobic007G053100 Sobic005G139300--Sobic007G053100 Sobic003G419500 Sobic003G419500 Sobic005G139300--Sobic003G419500 Sobic009G060600 Sobic009G060600 Sobic005G139300--Sobic009G060600 Sobic005G045700 Sobic005G045700 Sobic005G139300--Sobic005G045700 Sobic002G266300 Sobic002G266300 Sobic005G139300--Sobic002G266300 Sobic009G250500 Sobic009G250500 Sobic005G139300--Sobic009G250500 Sobic002G010000 Sobic002G010000 Sobic005G139300--Sobic002G010000 Sobic005G036200 Sobic005G036200 Sobic005G139300--Sobic005G036200 Sobic009G022100 Sobic009G022100 Sobic002G002500--Sobic009G022100 Sobic002G067800 Sobic002G067800 Sobic002G002500--Sobic002G067800 Sobic008G073000 Sobic008G073000 Sobic002G002500--Sobic008G073000 Sobic002G045400 Sobic002G045400 Sobic002G002500--Sobic002G045400 Sobic008G165100 Sobic008G165100 Sobic002G002500--Sobic008G165100 Sobic003G433500 Sobic003G433500 Sobic002G002500--Sobic003G433500 Sobic005G059100 Sobic005G059100 Sobic002G002500--Sobic005G059100 Sobic009G216000 Sobic009G216000 Sobic002G002500--Sobic009G216000 Sobic002G159200 Sobic002G159200 Sobic002G002500--Sobic002G159200 Sobic004G286250--Sobic007G050900 Sobic010G054800 Sobic010G054800 Sobic004G286250--Sobic010G054800 Sobic010G195450 Sobic010G195450 Sobic004G286250--Sobic010G195450 Sobic010G114100 Sobic010G114100 Sobic004G286250--Sobic010G114100 Sobic004G286250--Sobic005G036200 Sobic010G112700 Sobic010G112700 Sobic004G286250--Sobic010G112700 Sobic004G286250--Sobic005G139300 Sobic006G047700 Sobic006G047700 Sobic004G286250--Sobic006G047700 Sobic004G242200 Sobic004G242200 Sobic004G286250--Sobic004G242200
Octagon: transcription factors


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