Gene annotation
Transcriptome id Sobic.002G378600.1,Sobic.002G378600.2
Synonym 1, ATCYCD2, Sb02g039550, CYCD2
Functional annotation cyclin, putative, expressed
UniProt C5X2G5
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF235
NCBI CDD KOG0656; G1/S-specific cyclin D
KEGG Orthology K18810; cyclin D1/2/4, plant
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT5G65420 : CYCLIN D4;1
RAP-DB (Rice) LOC_Os07g42860.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a048785
Brachypodium KQK15205 , KQK15207
Barley HORVU2Hr1G030130.3 , HORVU2Hr1G030130.2 , HORVU2Hr1G030130.1 , HORVU2Hr1G030130.4
Wheat TraesCS2D02G171700 , TraesCS2A02G164800 , TraesCS2B02G190700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G224300 expressed protein -
2 Sobic.003G102700 exostosin family protein, putative, expressed -
3 Sobic.004G215100 expressed protein -
4 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
5 Sobic.004G286200 DUF630/DUF632 domains containing protein, putative, expressed -
6 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
7 Sobic.009G200000 expressed protein -
8 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
9 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
10 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
11 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
12 Sobic.010G106100 endoglucanase, putative, expressed -
13 Sobic.002G155100 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed K12524: bifunctional aspartokinase / homoserine dehydrogenase 1
14 Sobic.001G166200 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
16 Sobic.001G395200 cyclin-related protein, putative, expressed -
17 Sobic.001G448000 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
18 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
19 Sobic.003G350400 thaumatin, putative, expressed -
20 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'


Gene co-expression network
sample Sobic002G378600 Sobic002G378600 Sobic009G224300 Sobic009G224300 Sobic002G378600--Sobic009G224300 Sobic003G102700 Sobic003G102700 Sobic002G378600--Sobic003G102700 Sobic004G215100 Sobic004G215100 Sobic002G378600--Sobic004G215100 Sobic004G115700 Sobic004G115700 Sobic002G378600--Sobic004G115700 Sobic004G286200 Sobic004G286200 Sobic002G378600--Sobic004G286200 Sobic006G084300 Sobic006G084300 Sobic002G378600--Sobic006G084300 Sobic009G200000 Sobic009G200000 Sobic002G378600--Sobic009G200000 Sobic001G268700 Sobic001G268700 Sobic002G378600--Sobic001G268700 Sobic002G367200 Sobic002G367200 Sobic002G378600--Sobic002G367200 Sobic003G147500 Sobic003G147500 Sobic009G224300--Sobic003G147500 Sobic006G016700 Sobic006G016700 Sobic009G224300--Sobic006G016700 Sobic009G224300--Sobic004G286200 Sobic001G493100 Sobic001G493100 Sobic009G224300--Sobic001G493100 Sobic007G219100 Sobic007G219100 Sobic009G224300--Sobic007G219100 Sobic009G207400 Sobic009G207400 Sobic009G224300--Sobic009G207400 Sobic003G350400 Sobic003G350400 Sobic009G224300--Sobic003G350400 Sobic007G082000 Sobic007G082000 Sobic009G224300--Sobic007G082000 Sobic010G257000 Sobic010G257000 Sobic009G224300--Sobic010G257000 Sobic001G199500 Sobic001G199500 Sobic003G102700--Sobic001G199500 Sobic005G102800 Sobic005G102800 Sobic003G102700--Sobic005G102800 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic002G168000 Sobic002G168000 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic003G102700--Sobic002G367200 Sobic003G251700 Sobic003G251700 Sobic004G215100--Sobic003G251700 Sobic006G172000 Sobic006G172000 Sobic004G215100--Sobic006G172000 Sobic004G215100--Sobic004G115700 Sobic004G269100 Sobic004G269100 Sobic004G215100--Sobic004G269100 Sobic004G215100--Sobic001G493100 Sobic001G448000 Sobic001G448000 Sobic004G215100--Sobic001G448000 Sobic007G097100 Sobic007G097100 Sobic004G215100--Sobic007G097100 Sobic004G215100--Sobic002G378600 Sobic010G106100 Sobic010G106100 Sobic004G215100--Sobic010G106100 Sobic004G115700--Sobic009G200000 Sobic008G042200 Sobic008G042200 Sobic004G115700--Sobic008G042200 Sobic005G092700 Sobic005G092700 Sobic004G115700--Sobic005G092700 Sobic008G190000 Sobic008G190000 Sobic004G115700--Sobic008G190000 Sobic006G240900 Sobic006G240900 Sobic004G115700--Sobic006G240900 Sobic004G115700--Sobic010G106100 Sobic006G110850 Sobic006G110850 Sobic004G115700--Sobic006G110850 Sobic003G366000 Sobic003G366000 Sobic004G115700--Sobic003G366000 Sobic009G124800 Sobic009G124800 Sobic004G115700--Sobic009G124800 Sobic008G118100 Sobic008G118100 Sobic004G286200--Sobic008G118100 Sobic009G225500 Sobic009G225500 Sobic004G286200--Sobic009G225500 Sobic004G286200--Sobic009G224300 Sobic004G286200--Sobic001G493100 Sobic004G286200--Sobic002G187600 Sobic007G050800 Sobic007G050800 Sobic004G286200--Sobic007G050800 Sobic004G286200--Sobic006G016700 Sobic006G135800 Sobic006G135800 Sobic004G286200--Sobic006G135800 Sobic004G286200--Sobic007G097100 Sobic004G315700 Sobic004G315700 Sobic006G084300--Sobic004G315700 Sobic006G084300--Sobic001G199500 Sobic008G090000 Sobic008G090000 Sobic006G084300--Sobic008G090000 Sobic009G212100 Sobic009G212100 Sobic006G084300--Sobic009G212100 Sobic006G071628 Sobic006G071628 Sobic006G084300--Sobic006G071628 Sobic001G425700 Sobic001G425700 Sobic006G084300--Sobic001G425700 Sobic003G104100 Sobic003G104100 Sobic006G084300--Sobic003G104100 Sobic006G084300--Sobic006G281900 Sobic006G084300--Sobic003G024000 Sobic009G200000--Sobic008G042200 Sobic009G200000--Sobic004G115700 Sobic009G200000--Sobic005G092700 Sobic009G200000--Sobic008G190000 Sobic009G200000--Sobic006G240900 Sobic009G200000--Sobic009G207400 Sobic001G075700 Sobic001G075700 Sobic009G200000--Sobic001G075700 Sobic001G244900 Sobic001G244900 Sobic009G200000--Sobic001G244900 Sobic005G125300 Sobic005G125300 Sobic009G200000--Sobic005G125300 Sobic002G050500 Sobic002G050500 Sobic001G268700--Sobic002G050500 Sobic010G221200 Sobic010G221200 Sobic001G268700--Sobic010G221200 Sobic005G120600 Sobic005G120600 Sobic001G268700--Sobic005G120600 Sobic004G116500 Sobic004G116500 Sobic001G268700--Sobic004G116500 Sobic003G107900 Sobic003G107900 Sobic001G268700--Sobic003G107900 Sobic002G223300 Sobic002G223300 Sobic001G268700--Sobic002G223300 Sobic001G372900 Sobic001G372900 Sobic001G268700--Sobic001G372900 Sobic010G063566 Sobic010G063566 Sobic001G268700--Sobic010G063566 Sobic008G100400 Sobic008G100400 Sobic001G268700--Sobic008G100400 Sobic009G028100 Sobic009G028100 Sobic002G367200--Sobic009G028100 Sobic003G122800 Sobic003G122800 Sobic002G367200--Sobic003G122800 Sobic002G367200--Sobic003G102700 Sobic002G095300 Sobic002G095300 Sobic002G367200--Sobic002G095300 Sobic007G199800 Sobic007G199800 Sobic002G367200--Sobic007G199800 Sobic002G367200--Sobic007G050800 Sobic005G068800 Sobic005G068800 Sobic002G367200--Sobic005G068800 Sobic002G367200--Sobic009G224300 Sobic002G367200--Sobic007G082000
Octagon: transcription factors


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