Gene annotation
Transcriptome id Sobic.006G144000.2
Synonym Sb06g022310
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PM02
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF115
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G04790 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g43220.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056490
Brachypodium PNT61459 , PNT61458 , KQJ83526 , KQJ83527
Barley HORVU2Hr1G088780.11 , HORVU2Hr1G088780.9 , HORVU2Hr1G088780.3 , HORVU2Hr1G088780.2 , HORVU2Hr1G088780.1 , HORVU2Hr1G088780.7 , HORVU2Hr1G088780.6 , HORVU2Hr1G088780.5 , HORVU2Hr1G088780.4
Wheat TraesCS2A02G385400 , TraesCS2A02G385400 , TraesCS2A02G385400 , TraesCS2D02G382100 , TraesCS2B02G402300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G144000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G017200 protein transporter, putative, expressed K12275: translocation protein SEC62
2 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
3 Sobic.009G059400 expressed protein -
4 Sobic.010G237650 - -
5 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
6 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
7 Sobic.006G130200 expressed protein -
8 Sobic.004G313300 expressed protein -
9 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
10 Sobic.001G202266 - -
11 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
12 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
13 Sobic.004G042900 VIL2 protein, putative, expressed -
14 Sobic.006G224300 APO, putative, expressed -
15 Sobic.010G209700 expressed protein -
16 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
17 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
18 Sobic.003G092066 - -
19 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
20 Sobic.010G063300 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic006G144000 Sobic006G144000 Sobic001G017200 Sobic001G017200 Sobic006G144000--Sobic001G017200 Sobic009G017200 Sobic009G017200 Sobic006G144000--Sobic009G017200 Sobic009G059400 Sobic009G059400 Sobic006G144000--Sobic009G059400 Sobic010G237650 Sobic010G237650 Sobic006G144000--Sobic010G237650 Sobic004G180900 Sobic004G180900 Sobic006G144000--Sobic004G180900 Sobic004G116600 Sobic004G116600 Sobic006G144000--Sobic004G116600 Sobic006G130200 Sobic006G130200 Sobic006G144000--Sobic006G130200 Sobic004G313300 Sobic004G313300 Sobic006G144000--Sobic004G313300 Sobic001G425000 Sobic001G425000 Sobic006G144000--Sobic001G425000 Sobic001G017200--Sobic006G144000 Sobic001G017200--Sobic004G180900 Sobic001G017200--Sobic009G017200 Sobic007G158900 Sobic007G158900 Sobic001G017200--Sobic007G158900 Sobic004G042900 Sobic004G042900 Sobic001G017200--Sobic004G042900 Sobic001G017200--Sobic009G059400 Sobic007G192400 Sobic007G192400 Sobic001G017200--Sobic007G192400 Sobic001G017200--Sobic004G116600 Sobic007G218600 Sobic007G218600 Sobic001G017200--Sobic007G218600 Sobic009G017200--Sobic004G180900 Sobic009G017200--Sobic009G059400 Sobic009G137900 Sobic009G137900 Sobic009G017200--Sobic009G137900 Sobic008G058800 Sobic008G058800 Sobic009G017200--Sobic008G058800 Sobic009G017200--Sobic006G144000 Sobic009G017200--Sobic001G425000 Sobic001G042200 Sobic001G042200 Sobic009G017200--Sobic001G042200 Sobic010G077500 Sobic010G077500 Sobic009G017200--Sobic010G077500 Sobic005G198200 Sobic005G198200 Sobic009G017200--Sobic005G198200 Sobic009G059400--Sobic009G017200 Sobic009G059400--Sobic005G198200 Sobic009G059400--Sobic007G218600 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G125000 Sobic009G125000 Sobic009G059400--Sobic009G125000 Sobic004G345400 Sobic004G345400 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic006G224300 Sobic006G224300 Sobic009G059400--Sobic006G224300 Sobic002G033600 Sobic002G033600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic002G268900 Sobic002G268900 Sobic010G237650--Sobic002G268900 Sobic010G237650--Sobic006G144000 Sobic007G139400 Sobic007G139400 Sobic010G237650--Sobic007G139400 Sobic006G215100 Sobic006G215100 Sobic010G237650--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic010G237650--Sobic010G073600 Sobic005G128000 Sobic005G128000 Sobic010G237650--Sobic005G128000 Sobic009G102000 Sobic009G102000 Sobic010G237650--Sobic009G102000 Sobic004G180900--Sobic009G017200 Sobic007G056500 Sobic007G056500 Sobic004G180900--Sobic007G056500 Sobic004G180900--Sobic001G425000 Sobic004G180900--Sobic004G345400 Sobic006G186400 Sobic006G186400 Sobic004G180900--Sobic006G186400 Sobic004G180900--Sobic008G058800 Sobic007G026000 Sobic007G026000 Sobic004G180900--Sobic007G026000 Sobic004G180900--Sobic010G077500 Sobic003G381600 Sobic003G381600 Sobic004G180900--Sobic003G381600 Sobic001G202266 Sobic001G202266 Sobic004G116600--Sobic001G202266 Sobic001G287800 Sobic001G287800 Sobic004G116600--Sobic001G287800 Sobic004G116600--Sobic004G180900 Sobic004G116600--Sobic006G130200 Sobic005G049000 Sobic005G049000 Sobic004G116600--Sobic005G049000 Sobic004G116600--Sobic006G144000 Sobic004G218300 Sobic004G218300 Sobic004G116600--Sobic004G218300 Sobic004G116600--Sobic001G017200 Sobic004G116600--Sobic007G192400 Sobic006G128800 Sobic006G128800 Sobic006G130200--Sobic006G128800 Sobic006G130200--Sobic004G218300 Sobic010G174800 Sobic010G174800 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic003G398400 Sobic003G398400 Sobic006G130200--Sobic003G398400 Sobic006G130200--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic006G130200--Sobic006G092800 Sobic003G336800 Sobic003G336800 Sobic006G130200--Sobic003G336800 Sobic001G235000 Sobic001G235000 Sobic006G130200--Sobic001G235000 Sobic004G313300--Sobic006G144000 Sobic010G063300 Sobic010G063300 Sobic004G313300--Sobic010G063300 Sobic004G313300--Sobic006G224300 Sobic003G070700 Sobic003G070700 Sobic004G313300--Sobic003G070700 Sobic004G353400 Sobic004G353400 Sobic004G313300--Sobic004G353400 Sobic004G313300--Sobic009G125000 Sobic005G040900 Sobic005G040900 Sobic004G313300--Sobic005G040900 Sobic004G313300--Sobic005G198200 Sobic004G152000 Sobic004G152000 Sobic004G313300--Sobic004G152000 Sobic002G197100 Sobic002G197100 Sobic001G425000--Sobic002G197100 Sobic001G176200 Sobic001G176200 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic005G015900 Sobic005G015900 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G425000--Sobic001G202266 Sobic001G425000--Sobic006G186400 Sobic001G425000--Sobic004G180900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.