Gene annotation
Transcriptome id Sobic.004G042900.1
Synonym Sb04g003700, VIN3
Functional annotation VIL2 protein, putative, expressed
UniProt A0A194YMN1
Pfam PF07227
Panther DB PTHR21736 PTHR21736:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57380 : Fibronectin type III domain-containing protein
RAP-DB (Rice) LOC_Os02g05840.1 : VIL2 protein, putative, expressed
MaizeGDB (Corn) Zm00025a034879 , Zm00025a019008
Brachypodium KQJ93372 , KQJ93373 , PNT65902
Barley HORVU6Hr1G022770.6 , HORVU6Hr1G022770.4 , HORVU6Hr1G022770.5 , HORVU6Hr1G022770.2 , HORVU6Hr1G022770.3 , HORVU6Hr1G022770.1
Wheat TraesCS6D02G113600 , TraesCS6A02G123400 , TraesCS6B02G151600 , TraesCS6B02G151600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G147100 esterase/lipase/thioesterase, putative, expressed -
2 Sobic.001G017200 protein transporter, putative, expressed K12275: translocation protein SEC62
3 Sobic.005G009100 OsFBX184 - F-box domain containing protein, expressed -
4 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
5 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
6 Sobic.003G190200 Sec1 family transport protein, putative, expressed -
7 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.002G147200 esterase/lipase/thioesterase, putative, expressed -
9 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
10 Sobic.003G402900 HYS1, putative, expressed -
11 Sobic.004G122900 gamma-secretase subunit APH-1B, putative, expressed -
12 Sobic.002G203600 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
13 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
14 Sobic.009G228400 lipase-related, putative, expressed -
15 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
16 Sobic.010G237650 - -
17 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
18 Sobic.005G123400 expressed protein -
19 Sobic.006G165800 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
20 Sobic.010G035801 - -


Gene co-expression network
sample Sobic004G042900 Sobic004G042900 Sobic002G147100 Sobic002G147100 Sobic004G042900--Sobic002G147100 Sobic001G017200 Sobic001G017200 Sobic004G042900--Sobic001G017200 Sobic005G009100 Sobic005G009100 Sobic004G042900--Sobic005G009100 Sobic004G353400 Sobic004G353400 Sobic004G042900--Sobic004G353400 Sobic007G030100 Sobic007G030100 Sobic004G042900--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic004G042900--Sobic003G190200 Sobic006G144000 Sobic006G144000 Sobic004G042900--Sobic006G144000 Sobic002G147200 Sobic002G147200 Sobic004G042900--Sobic002G147200 Sobic004G218300 Sobic004G218300 Sobic004G042900--Sobic004G218300 Sobic002G147100--Sobic002G147200 Sobic007G147400 Sobic007G147400 Sobic002G147100--Sobic007G147400 Sobic002G147100--Sobic007G030100 Sobic009G228400 Sobic009G228400 Sobic002G147100--Sobic009G228400 Sobic002G147100--Sobic004G042900 Sobic009G102000 Sobic009G102000 Sobic002G147100--Sobic009G102000 Sobic006G165800 Sobic006G165800 Sobic002G147100--Sobic006G165800 Sobic003G398400 Sobic003G398400 Sobic002G147100--Sobic003G398400 Sobic002G317400 Sobic002G317400 Sobic002G147100--Sobic002G317400 Sobic001G017200--Sobic006G144000 Sobic004G180900 Sobic004G180900 Sobic001G017200--Sobic004G180900 Sobic009G017200 Sobic009G017200 Sobic001G017200--Sobic009G017200 Sobic007G158900 Sobic007G158900 Sobic001G017200--Sobic007G158900 Sobic001G017200--Sobic004G042900 Sobic009G059400 Sobic009G059400 Sobic001G017200--Sobic009G059400 Sobic007G192400 Sobic007G192400 Sobic001G017200--Sobic007G192400 Sobic004G116600 Sobic004G116600 Sobic001G017200--Sobic004G116600 Sobic007G218600 Sobic007G218600 Sobic001G017200--Sobic007G218600 Sobic001G141400 Sobic001G141400 Sobic005G009100--Sobic001G141400 Sobic004G122900 Sobic004G122900 Sobic005G009100--Sobic004G122900 Sobic005G009100--Sobic002G147200 Sobic009G199500 Sobic009G199500 Sobic005G009100--Sobic009G199500 Sobic005G009100--Sobic004G042900 Sobic005G009100--Sobic007G192400 Sobic010G181600 Sobic010G181600 Sobic005G009100--Sobic010G181600 Sobic005G123400 Sobic005G123400 Sobic005G009100--Sobic005G123400 Sobic005G009100--Sobic007G030100 Sobic006G091000 Sobic006G091000 Sobic004G353400--Sobic006G091000 Sobic009G040800 Sobic009G040800 Sobic004G353400--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic004G353400--Sobic005G178950 Sobic004G353400--Sobic004G042900 Sobic007G053400 Sobic007G053400 Sobic004G353400--Sobic007G053400 Sobic001G100800 Sobic001G100800 Sobic004G353400--Sobic001G100800 Sobic007G016900 Sobic007G016900 Sobic004G353400--Sobic007G016900 Sobic004G353400--Sobic006G144000 Sobic002G299100 Sobic002G299100 Sobic004G353400--Sobic002G299100 Sobic007G030100--Sobic003G190200 Sobic007G030100--Sobic002G147200 Sobic003G394500 Sobic003G394500 Sobic007G030100--Sobic003G394500 Sobic003G117800 Sobic003G117800 Sobic007G030100--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic007G030100--Sobic001G385000 Sobic007G172700 Sobic007G172700 Sobic007G030100--Sobic007G172700 Sobic001G424800 Sobic001G424800 Sobic007G030100--Sobic001G424800 Sobic006G232800 Sobic006G232800 Sobic007G030100--Sobic006G232800 Sobic003G428000 Sobic003G428000 Sobic007G030100--Sobic003G428000 Sobic003G190200--Sobic007G030100 Sobic003G190200--Sobic003G394500 Sobic003G190200--Sobic007G172700 Sobic003G021600 Sobic003G021600 Sobic003G190200--Sobic003G021600 Sobic009G252300 Sobic009G252300 Sobic003G190200--Sobic009G252300 Sobic003G190200--Sobic001G424800 Sobic003G393200 Sobic003G393200 Sobic003G190200--Sobic003G393200 Sobic003G190200--Sobic003G428000 Sobic003G190200--Sobic001G385000 Sobic006G144000--Sobic001G017200 Sobic006G144000--Sobic009G017200 Sobic006G144000--Sobic009G059400 Sobic010G237650 Sobic010G237650 Sobic006G144000--Sobic010G237650 Sobic006G144000--Sobic004G180900 Sobic006G144000--Sobic004G116600 Sobic006G130200 Sobic006G130200 Sobic006G144000--Sobic006G130200 Sobic004G313300 Sobic004G313300 Sobic006G144000--Sobic004G313300 Sobic001G425000 Sobic001G425000 Sobic006G144000--Sobic001G425000 Sobic002G147200--Sobic007G030100 Sobic002G147200--Sobic002G147100 Sobic002G147200--Sobic003G190200 Sobic009G040250 Sobic009G040250 Sobic002G147200--Sobic009G040250 Sobic005G063200 Sobic005G063200 Sobic002G147200--Sobic005G063200 Sobic002G147200--Sobic003G428000 Sobic002G147200--Sobic003G117800 Sobic001G114200 Sobic001G114200 Sobic002G147200--Sobic001G114200 Sobic002G147200--Sobic001G385000 Sobic004G218300--Sobic003G398400 Sobic004G218300--Sobic006G130200 Sobic004G259300 Sobic004G259300 Sobic004G218300--Sobic004G259300 Sobic004G218300--Sobic009G228400 Sobic006G215100 Sobic006G215100 Sobic004G218300--Sobic006G215100 Sobic003G407100 Sobic003G407100 Sobic004G218300--Sobic003G407100 Sobic004G218300--Sobic007G192400 Sobic004G218300--Sobic002G147100 Sobic004G218300--Sobic002G317400
Octagon: transcription factors


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