Gene annotation
Transcriptome id Sobic.004G152000.1
Synonym Sb04g020190
Functional annotation RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
UniProt A0A194YR03
Pfam PF00098 PF01336 PF04057 PF16900 PF08646
Panther DB PTHR23273 PTHR23273:SF12
NCBI CDD -
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding GO:0006260DNA replication GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G45400 : Replication factor-A protein 1-related
RAP-DB (Rice) LOC_Os05g02040.1 : RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
MaizeGDB (Corn) -
Brachypodium KQK07998
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G152000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
2 Sobic.003G389800 nucleotide-sugar transporter family protein, putative, expressed -
3 Sobic.010G063300 protein kinase domain containing protein, expressed -
4 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
5 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G088700 domain of unknown function domain containing protein, expressed -
7 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
9 Sobic.003G084750 - -
10 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
11 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
12 Sobic.003G336800 expressed protein -
13 Sobic.006G128800 expressed protein -
14 Sobic.003G070700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.010G074900 G protein coupled receptor, putative, expressed -
16 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
17 Sobic.003G101300 expressed protein -
18 Sobic.004G313300 expressed protein -
19 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
20 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6


Gene co-expression network
sample Sobic004G152000 Sobic004G152000 Sobic010G174800 Sobic010G174800 Sobic004G152000--Sobic010G174800 Sobic003G389800 Sobic003G389800 Sobic004G152000--Sobic003G389800 Sobic010G063300 Sobic010G063300 Sobic004G152000--Sobic010G063300 Sobic001G390500 Sobic001G390500 Sobic004G152000--Sobic001G390500 Sobic002G121000 Sobic002G121000 Sobic004G152000--Sobic002G121000 Sobic002G088700 Sobic002G088700 Sobic004G152000--Sobic002G088700 Sobic001G061700 Sobic001G061700 Sobic004G152000--Sobic001G061700 Sobic003G248500 Sobic003G248500 Sobic004G152000--Sobic003G248500 Sobic003G084750 Sobic003G084750 Sobic004G152000--Sobic003G084750 Sobic010G174800--Sobic003G248500 Sobic006G128800 Sobic006G128800 Sobic010G174800--Sobic006G128800 Sobic003G185200 Sobic003G185200 Sobic010G174800--Sobic003G185200 Sobic003G359300 Sobic003G359300 Sobic010G174800--Sobic003G359300 Sobic006G130200 Sobic006G130200 Sobic010G174800--Sobic006G130200 Sobic003G336800 Sobic003G336800 Sobic010G174800--Sobic003G336800 Sobic004G263900 Sobic004G263900 Sobic010G174800--Sobic004G263900 Sobic010G174800--Sobic001G390500 Sobic001G028400 Sobic001G028400 Sobic010G174800--Sobic001G028400 Sobic010G217200 Sobic010G217200 Sobic003G389800--Sobic010G217200 Sobic004G013600 Sobic004G013600 Sobic003G389800--Sobic004G013600 Sobic006G092800 Sobic006G092800 Sobic003G389800--Sobic006G092800 Sobic010G074900 Sobic010G074900 Sobic003G389800--Sobic010G074900 Sobic001G056200 Sobic001G056200 Sobic003G389800--Sobic001G056200 Sobic001G049600 Sobic001G049600 Sobic003G389800--Sobic001G049600 Sobic004G015800 Sobic004G015800 Sobic003G389800--Sobic004G015800 Sobic006G254600 Sobic006G254600 Sobic003G389800--Sobic006G254600 Sobic003G389800--Sobic010G174800 Sobic003G070700 Sobic003G070700 Sobic010G063300--Sobic003G070700 Sobic010G063300--Sobic003G336800 Sobic010G063300--Sobic006G130200 Sobic006G141800 Sobic006G141800 Sobic010G063300--Sobic006G141800 Sobic004G313300 Sobic004G313300 Sobic010G063300--Sobic004G313300 Sobic010G063300--Sobic004G152000 Sobic006G144000 Sobic006G144000 Sobic010G063300--Sobic006G144000 Sobic010G063300--Sobic010G174800 Sobic009G000400 Sobic009G000400 Sobic010G063300--Sobic009G000400 Sobic001G083600 Sobic001G083600 Sobic001G390500--Sobic001G083600 Sobic001G390500--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic001G390500--Sobic010G055500 Sobic007G111100 Sobic007G111100 Sobic001G390500--Sobic007G111100 Sobic001G390500--Sobic004G263900 Sobic003G189900 Sobic003G189900 Sobic001G390500--Sobic003G189900 Sobic001G390500--Sobic010G174800 Sobic010G071200 Sobic010G071200 Sobic001G390500--Sobic010G071200 Sobic002G084300 Sobic002G084300 Sobic001G390500--Sobic002G084300 Sobic007G038800 Sobic007G038800 Sobic002G121000--Sobic007G038800 Sobic009G034400 Sobic009G034400 Sobic002G121000--Sobic009G034400 Sobic009G036900 Sobic009G036900 Sobic002G121000--Sobic009G036900 Sobic002G276900 Sobic002G276900 Sobic002G121000--Sobic002G276900 Sobic002G068300 Sobic002G068300 Sobic002G121000--Sobic002G068300 Sobic004G122000 Sobic004G122000 Sobic002G121000--Sobic004G122000 Sobic001G230900 Sobic001G230900 Sobic002G121000--Sobic001G230900 Sobic003G416600 Sobic003G416600 Sobic002G121000--Sobic003G416600 Sobic001G424500 Sobic001G424500 Sobic002G121000--Sobic001G424500 Sobic001G281700 Sobic001G281700 Sobic002G088700--Sobic001G281700 Sobic004G083200 Sobic004G083200 Sobic002G088700--Sobic004G083200 Sobic001G206000 Sobic001G206000 Sobic002G088700--Sobic001G206000 Sobic002G088700--Sobic001G390500 Sobic004G077000 Sobic004G077000 Sobic002G088700--Sobic004G077000 Sobic002G088700--Sobic004G152000 Sobic002G088700--Sobic003G248500 Sobic007G115900 Sobic007G115900 Sobic002G088700--Sobic007G115900 Sobic003G024800 Sobic003G024800 Sobic002G088700--Sobic003G024800 Sobic004G059000 Sobic004G059000 Sobic001G061700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic001G061700--Sobic002G272600 Sobic003G350600 Sobic003G350600 Sobic001G061700--Sobic003G350600 Sobic007G205000 Sobic007G205000 Sobic001G061700--Sobic007G205000 Sobic002G365100 Sobic002G365100 Sobic001G061700--Sobic002G365100 Sobic010G105600 Sobic010G105600 Sobic001G061700--Sobic010G105600 Sobic003G273500 Sobic003G273500 Sobic001G061700--Sobic003G273500 Sobic001G061700--Sobic001G028400 Sobic002G378200 Sobic002G378200 Sobic001G061700--Sobic002G378200 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic003G248500--Sobic010G174800 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G248500--Sobic003G185200 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic003G248500--Sobic006G128800 Sobic009G032300 Sobic009G032300 Sobic003G084750--Sobic009G032300 Sobic008G129100 Sobic008G129100 Sobic003G084750--Sobic008G129100 Sobic003G084750--Sobic006G130200 Sobic003G084750--Sobic010G174800 Sobic001G109500 Sobic001G109500 Sobic003G084750--Sobic001G109500 Sobic003G084750--Sobic003G051200 Sobic010G264400 Sobic010G264400 Sobic003G084750--Sobic010G264400 Sobic005G180700 Sobic005G180700 Sobic003G084750--Sobic005G180700 Sobic003G084750--Sobic004G152000
Octagon: transcription factors


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