Gene annotation
Transcriptome id Sobic.001G443300.1
Synonym Sb01g041660, APC6
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5WRM5
Pfam PF12895 PF13414 PF07719
Panther DB PTHR12558 PTHR12558:SF9
NCBI CDD -
KEGG Orthology K03353; APC6, anaphase-promoting complex subunit 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78770 : anaphase promoting complex 6
RAP-DB (Rice) LOC_Os03g13370.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052949 , Zm00025a001479
Brachypodium KQK22679 , PNT77785 , PNT77784 , PNT77783 , PNT77782
Barley HORVU4Hr1G064670.9 , HORVU4Hr1G064670.8 , HORVU4Hr1G064670.2 , HORVU4Hr1G064670.7 , HORVU4Hr1G064670.6 , HORVU4Hr1G064670.5 , HORVU4Hr1G064670.4 , HORVU4Hr1G064670.1 , HORVU4Hr1G064670.22 , HORVU4Hr1G064670.20 , HORVU4Hr1G064670.26 , HORVU4Hr1G064670.27 , HORVU4Hr1G064670.24 , HORVU4Hr1G064670.25 , HORVU4Hr1G064670.28 , HORVU4Hr1G064670.13 , HORVU4Hr1G064670.12 , HORVU4Hr1G064670.11 , HORVU4Hr1G064670.10 , HORVU4Hr1G064670.17 , HORVU4Hr1G064670.16 , HORVU4Hr1G064670.38 , HORVU4Hr1G064670.35 , HORVU4Hr1G064670.34 , HORVU4Hr1G064670.37 , HORVU4Hr1G064670.36 , HORVU4Hr1G064670.32
Wheat TraesCS4A02G075000 , TraesCS4D02G232400 , TraesCS4B02G230900 , TraesCS4B02G230900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G443300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G106300 fanconi anemia L, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
2 Sobic.008G164375 - -
3 Sobic.002G057050 - -
4 Sobic.010G215400 expressed protein -
5 Sobic.003G256300 transcription factor Dp, putative, expressed -
6 Sobic.004G313700 acetyltransferase, GNAT family, putative, expressed -
7 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.002G241700 phosphatidylinositol transfer, putative, expressed -
9 Sobic.010G025100 HORMA domain containing protein, putative, expressed -
10 Sobic.003G293800 OsMan02 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
11 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
12 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
13 Sobic.003G130500 presenilin, putative, expressed K04505: PSEN1, presenilin 1
14 Sobic.003G066400 - -
15 Sobic.004G258200 expressed protein -
16 Sobic.003G226950 - -
17 Sobic.001G125600 - -
18 Sobic.001G323400 expressed protein -
19 Sobic.007G025350 - -
20 Sobic.001G263801 - -


Gene co-expression network
sample Sobic001G443300 Sobic001G443300 Sobic001G106300 Sobic001G106300 Sobic001G443300--Sobic001G106300 Sobic008G164375 Sobic008G164375 Sobic001G443300--Sobic008G164375 Sobic002G057050 Sobic002G057050 Sobic001G443300--Sobic002G057050 Sobic010G215400 Sobic010G215400 Sobic001G443300--Sobic010G215400 Sobic003G256300 Sobic003G256300 Sobic001G443300--Sobic003G256300 Sobic004G313700 Sobic004G313700 Sobic001G443300--Sobic004G313700 Sobic004G290400 Sobic004G290400 Sobic001G443300--Sobic004G290400 Sobic002G241700 Sobic002G241700 Sobic001G443300--Sobic002G241700 Sobic010G025100 Sobic010G025100 Sobic001G443300--Sobic010G025100 Sobic001G106300--Sobic002G057050 Sobic001G106300--Sobic001G443300 Sobic003G289700 Sobic003G289700 Sobic001G106300--Sobic003G289700 Sobic006G096800 Sobic006G096800 Sobic001G106300--Sobic006G096800 Sobic001G106300--Sobic004G313700 Sobic001G022000 Sobic001G022000 Sobic001G106300--Sobic001G022000 Sobic003G130500 Sobic003G130500 Sobic001G106300--Sobic003G130500 Sobic002G123600 Sobic002G123600 Sobic001G106300--Sobic002G123600 Sobic001G500500 Sobic001G500500 Sobic001G106300--Sobic001G500500 Sobic007G025350 Sobic007G025350 Sobic008G164375--Sobic007G025350 Sobic001G263801 Sobic001G263801 Sobic008G164375--Sobic001G263801 Sobic002G005500 Sobic002G005500 Sobic008G164375--Sobic002G005500 Sobic003G226950 Sobic003G226950 Sobic008G164375--Sobic003G226950 Sobic002G125500 Sobic002G125500 Sobic008G164375--Sobic002G125500 Sobic010G201100 Sobic010G201100 Sobic008G164375--Sobic010G201100 Sobic009G111700 Sobic009G111700 Sobic008G164375--Sobic009G111700 Sobic002G031301 Sobic002G031301 Sobic008G164375--Sobic002G031301 Sobic007G119101 Sobic007G119101 Sobic008G164375--Sobic007G119101 Sobic002G057050--Sobic001G106300 Sobic009G063450 Sobic009G063450 Sobic002G057050--Sobic009G063450 Sobic002G057050--Sobic001G443300 Sobic002G057050--Sobic004G290400 Sobic008G038700 Sobic008G038700 Sobic002G057050--Sobic008G038700 Sobic002G267300 Sobic002G267300 Sobic002G057050--Sobic002G267300 Sobic009G031450 Sobic009G031450 Sobic002G057050--Sobic009G031450 Sobic010G042700 Sobic010G042700 Sobic002G057050--Sobic010G042700 Sobic001G162900 Sobic001G162900 Sobic002G057050--Sobic001G162900 Sobic004G071700 Sobic004G071700 Sobic010G215400--Sobic004G071700 Sobic001G174400 Sobic001G174400 Sobic010G215400--Sobic001G174400 Sobic010G215400--Sobic003G256300 Sobic010G142600 Sobic010G142600 Sobic010G215400--Sobic010G142600 Sobic001G153500 Sobic001G153500 Sobic010G215400--Sobic001G153500 Sobic004G264100 Sobic004G264100 Sobic010G215400--Sobic004G264100 Sobic004G079600 Sobic004G079600 Sobic010G215400--Sobic004G079600 Sobic001G207900 Sobic001G207900 Sobic010G215400--Sobic001G207900 Sobic009G167400 Sobic009G167400 Sobic010G215400--Sobic009G167400 Sobic003G256300--Sobic004G071700 Sobic003G256300--Sobic001G153500 Sobic003G256300--Sobic010G215400 Sobic003G256300--Sobic004G264100 Sobic003G216400 Sobic003G216400 Sobic003G256300--Sobic003G216400 Sobic003G256300--Sobic004G079600 Sobic003G256300--Sobic001G207900 Sobic003G256300--Sobic001G174400 Sobic001G135900 Sobic001G135900 Sobic003G256300--Sobic001G135900 Sobic003G028400 Sobic003G028400 Sobic004G313700--Sobic003G028400 Sobic001G268300 Sobic001G268300 Sobic004G313700--Sobic001G268300 Sobic008G031200 Sobic008G031200 Sobic004G313700--Sobic008G031200 Sobic002G239601 Sobic002G239601 Sobic004G313700--Sobic002G239601 Sobic003G235700 Sobic003G235700 Sobic004G313700--Sobic003G235700 Sobic004G129500 Sobic004G129500 Sobic004G313700--Sobic004G129500 Sobic001G537400 Sobic001G537400 Sobic004G313700--Sobic001G537400 Sobic003G392100 Sobic003G392100 Sobic004G313700--Sobic003G392100 Sobic003G144000 Sobic003G144000 Sobic004G313700--Sobic003G144000 Sobic002G044900 Sobic002G044900 Sobic004G290400--Sobic002G044900 Sobic009G067200 Sobic009G067200 Sobic004G290400--Sobic009G067200 Sobic006G088500 Sobic006G088500 Sobic004G290400--Sobic006G088500 Sobic002G401301 Sobic002G401301 Sobic004G290400--Sobic002G401301 Sobic002G312100 Sobic002G312100 Sobic004G290400--Sobic002G312100 Sobic003G326100 Sobic003G326100 Sobic004G290400--Sobic003G326100 Sobic008G053000 Sobic008G053000 Sobic004G290400--Sobic008G053000 Sobic007G007650 Sobic007G007650 Sobic004G290400--Sobic007G007650 Sobic004G274000 Sobic004G274000 Sobic004G290400--Sobic004G274000 Sobic009G133100 Sobic009G133100 Sobic002G241700--Sobic009G133100 Sobic007G191300 Sobic007G191300 Sobic002G241700--Sobic007G191300 Sobic002G319700 Sobic002G319700 Sobic002G241700--Sobic002G319700 Sobic006G069400 Sobic006G069400 Sobic002G241700--Sobic006G069400 Sobic004G233900 Sobic004G233900 Sobic002G241700--Sobic004G233900 Sobic004G101100 Sobic004G101100 Sobic002G241700--Sobic004G101100 Sobic004G072400 Sobic004G072400 Sobic002G241700--Sobic004G072400 Sobic003G212800 Sobic003G212800 Sobic002G241700--Sobic003G212800 Sobic008G014900 Sobic008G014900 Sobic002G241700--Sobic008G014900 Sobic010G025100--Sobic010G215400 Sobic010G025100--Sobic003G256300 Sobic010G025100--Sobic006G096800 Sobic010G025100--Sobic001G443300 Sobic001G125600 Sobic001G125600 Sobic010G025100--Sobic001G125600 Sobic008G131651 Sobic008G131651 Sobic010G025100--Sobic008G131651 Sobic010G025100--Sobic002G057050 Sobic008G012500 Sobic008G012500 Sobic010G025100--Sobic008G012500 Sobic008G023801 Sobic008G023801 Sobic010G025100--Sobic008G023801
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.