Gene annotation
Transcriptome id Sobic.006G062200.1,Sobic.006G062200.6,Sobic.006G062200.3,Sobic.006G062200.4,Sobic.006G062200.5
Synonym ATSNM1, Sb06g014970, SNM1
Functional annotation DNA cross-link repair 1A protein, putative, expressed
UniProt A0A1B6PKJ1 , A0A1Z5RCZ3 , A0A1Z5RD95 , C5YFD7
Pfam PF07522
Panther DB PTHR23240 PTHR23240:SF6
NCBI CDD KOG1361; Predicted hydrolase involved in interstrand cross-link repair
KEGG Orthology K15340; DCLRE1A, SNM1A, DNA cross-link repair 1A protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26680 : DNA repair metallo-beta-lactamase family protein
RAP-DB (Rice) LOC_Os04g32930.1 : DNA cross-link repair 1A protein, putative, expressed
MaizeGDB (Corn) Zm00025a055968
Brachypodium KQJ82354 , KQJ82357 , KQJ82350 , KQJ82351 , KQJ82352 , PNT60956 , PNT60954 , PNT60955 , PNT60952 , PNT60953 , PNT60950 , PNT60951 , PNT60949
Barley HORVU2Hr1G071670.35 , HORVU2Hr1G071670.31 , HORVU2Hr1G071670.30 , HORVU2Hr1G071670.33 , HORVU2Hr1G071670.32 , HORVU2Hr1G071670.34 , HORVU2Hr1G071670.37 , HORVU2Hr1G071670.36 , HORVU2Hr1G071670.39 , HORVU2Hr1G071670.38 , HORVU2Hr1G071670.26 , HORVU2Hr1G071670.27 , HORVU2Hr1G071670.24 , HORVU2Hr1G071670.25 , HORVU2Hr1G071670.22 , HORVU2Hr1G071670.23 , HORVU2Hr1G071670.20 , HORVU2Hr1G071670.21 , HORVU2Hr1G071670.28 , HORVU2Hr1G071670.29 , HORVU2Hr1G071670.40 , HORVU2Hr1G071670.41 , HORVU2Hr1G071670.42 , HORVU2Hr1G071670.43 , HORVU2Hr1G071670.44 , HORVU2Hr1G071670.7 , HORVU2Hr1G071670.6 , HORVU2Hr1G071670.5 , HORVU2Hr1G071670.4 , HORVU2Hr1G071670.3 , HORVU2Hr1G071670.2 , HORVU2Hr1G071670.1 , HORVU2Hr1G071670.9 , HORVU2Hr1G071670.8 , HORVU2Hr1G071670.19 , HORVU2Hr1G071670.18 , HORVU2Hr1G071670.17 , HORVU2Hr1G071670.16 , HORVU2Hr1G071670.15 , HORVU2Hr1G071670.14 , HORVU2Hr1G071670.13 , HORVU2Hr1G071670.12 , HORVU2Hr1G071670.11 , HORVU2Hr1G071670.10
Wheat TraesCS2A02G289600 , TraesCS2A02G289600 , TraesCS2A02G289600 , TraesCS2B02G306200 , TraesCS2B02G306200 , TraesCS2B02G306200 , TraesCS2D02G287600 , TraesCS2D02G287600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G521900 CHCH domain containing protein, expressed K18183: cytochrome c oxidase assembly protein subunit 19
2 Sobic.002G252600 pob, putative, expressed -
3 Sobic.004G159600 - -
4 Sobic.002G128750 - -
5 Sobic.009G063450 - -
6 Sobic.001G535300 - -
7 Sobic.006G045200 - -
8 Sobic.004G193200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
9 Sobic.001G444100 peptide transporter, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
10 Sobic.001G327400 - -
11 Sobic.007G022400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR31 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
12 Sobic.009G031450 - -
13 Sobic.001G248600 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed K04120: ent-copalyl diphosphate synthase
14 Sobic.004G133301 - -
15 Sobic.002G319700 BCS1 protein, putative, expressed -
16 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.003G318650 - -
18 Sobic.001G177500 - -
19 Sobic.002G289350 - -
20 Sobic.004G143100 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G062200 Sobic006G062200 Sobic001G521900 Sobic001G521900 Sobic006G062200--Sobic001G521900 Sobic002G252600 Sobic002G252600 Sobic006G062200--Sobic002G252600 Sobic004G159600 Sobic004G159600 Sobic006G062200--Sobic004G159600 Sobic002G128750 Sobic002G128750 Sobic006G062200--Sobic002G128750 Sobic009G063450 Sobic009G063450 Sobic006G062200--Sobic009G063450 Sobic001G535300 Sobic001G535300 Sobic006G062200--Sobic001G535300 Sobic006G045200 Sobic006G045200 Sobic006G062200--Sobic006G045200 Sobic004G193200 Sobic004G193200 Sobic006G062200--Sobic004G193200 Sobic001G444100 Sobic001G444100 Sobic006G062200--Sobic001G444100 Sobic001G521900--Sobic004G159600 Sobic004G133301 Sobic004G133301 Sobic001G521900--Sobic004G133301 Sobic001G521900--Sobic002G252600 Sobic001G521900--Sobic006G062200 Sobic004G233900 Sobic004G233900 Sobic001G521900--Sobic004G233900 Sobic004G290400 Sobic004G290400 Sobic001G521900--Sobic004G290400 Sobic001G393600 Sobic001G393600 Sobic001G521900--Sobic001G393600 Sobic005G183000 Sobic005G183000 Sobic001G521900--Sobic005G183000 Sobic009G133100 Sobic009G133100 Sobic001G521900--Sobic009G133100 Sobic002G252600--Sobic004G133301 Sobic002G252600--Sobic001G393600 Sobic002G252600--Sobic001G521900 Sobic001G370100 Sobic001G370100 Sobic002G252600--Sobic001G370100 Sobic002G252600--Sobic004G159600 Sobic001G177500 Sobic001G177500 Sobic002G252600--Sobic001G177500 Sobic004G327100 Sobic004G327100 Sobic002G252600--Sobic004G327100 Sobic008G097000 Sobic008G097000 Sobic002G252600--Sobic008G097000 Sobic002G156700 Sobic002G156700 Sobic002G252600--Sobic002G156700 Sobic004G159600--Sobic001G521900 Sobic004G159600--Sobic004G133301 Sobic002G289350 Sobic002G289350 Sobic004G159600--Sobic002G289350 Sobic004G159600--Sobic004G290400 Sobic004G159600--Sobic002G252600 Sobic001G327400 Sobic001G327400 Sobic004G159600--Sobic001G327400 Sobic004G159600--Sobic004G233900 Sobic001G349800 Sobic001G349800 Sobic004G159600--Sobic001G349800 Sobic002G384800 Sobic002G384800 Sobic004G159600--Sobic002G384800 Sobic002G128750--Sobic001G177500 Sobic002G128750--Sobic001G370100 Sobic002G227800 Sobic002G227800 Sobic002G128750--Sobic002G227800 Sobic002G013500 Sobic002G013500 Sobic002G128750--Sobic002G013500 Sobic002G085700 Sobic002G085700 Sobic002G128750--Sobic002G085700 Sobic007G100900 Sobic007G100900 Sobic002G128750--Sobic007G100900 Sobic002G289701 Sobic002G289701 Sobic002G128750--Sobic002G289701 Sobic006G088500 Sobic006G088500 Sobic002G128750--Sobic006G088500 Sobic002G128750--Sobic001G535300 Sobic009G063450--Sobic001G535300 Sobic009G063450--Sobic002G128750 Sobic002G057050 Sobic002G057050 Sobic009G063450--Sobic002G057050 Sobic009G031450 Sobic009G031450 Sobic009G063450--Sobic009G031450 Sobic009G063450--Sobic004G290400 Sobic009G063450--Sobic002G085700 Sobic001G482500 Sobic001G482500 Sobic009G063450--Sobic001G482500 Sobic009G063450--Sobic001G327400 Sobic002G267300 Sobic002G267300 Sobic009G063450--Sobic002G267300 Sobic001G535300--Sobic002G128750 Sobic007G022400 Sobic007G022400 Sobic001G535300--Sobic007G022400 Sobic001G535300--Sobic009G063450 Sobic003G073700 Sobic003G073700 Sobic001G535300--Sobic003G073700 Sobic001G535300--Sobic006G045200 Sobic010G187201 Sobic010G187201 Sobic001G535300--Sobic010G187201 Sobic001G535300--Sobic001G177500 Sobic001G535300--Sobic002G013500 Sobic001G535300--Sobic002G085700 Sobic006G045200--Sobic001G535300 Sobic006G045200--Sobic002G128750 Sobic006G045200--Sobic007G022400 Sobic006G045200--Sobic004G193200 Sobic001G242350 Sobic001G242350 Sobic006G045200--Sobic001G242350 Sobic006G045200--Sobic001G444100 Sobic006G045200--Sobic001G177500 Sobic006G045200--Sobic002G013500 Sobic005G204400 Sobic005G204400 Sobic006G045200--Sobic005G204400 Sobic004G193200--Sobic002G128750 Sobic002G192700 Sobic002G192700 Sobic004G193200--Sobic002G192700 Sobic004G193200--Sobic001G370100 Sobic004G193200--Sobic001G177500 Sobic009G237300 Sobic009G237300 Sobic004G193200--Sobic009G237300 Sobic010G266000 Sobic010G266000 Sobic004G193200--Sobic010G266000 Sobic003G064150 Sobic003G064150 Sobic004G193200--Sobic003G064150 Sobic004G193200--Sobic002G289701 Sobic001G489225 Sobic001G489225 Sobic004G193200--Sobic001G489225 Sobic001G444100--Sobic001G327400 Sobic001G444100--Sobic004G159600 Sobic004G036500 Sobic004G036500 Sobic001G444100--Sobic004G036500 Sobic001G444100--Sobic002G013500 Sobic001G444100--Sobic002G252600 Sobic001G444100--Sobic006G045200 Sobic001G444100--Sobic001G370100 Sobic003G298500 Sobic003G298500 Sobic001G444100--Sobic003G298500 Sobic001G444100--Sobic001G177500
Octagon: transcription factors


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