Gene annotation
Transcriptome id Sobic.004G193200.1,Sobic.004G193200.4,Sobic.004G193200.3,Sobic.004G193200.2,Sobic.004G193200.7,Sobic.004G193200.5,Sobic.004G193200.8,Sobic.004G193200.6
Synonym Sb04g024110
Functional annotation tRNA pseudouridine synthase family protein, putative, expressed
UniProt A0A194YQN6 , A0A1Z5RPB0 , A0A194YRQ0 , A0A194YQJ9 , A0A194YQN5 , A0A1Z5RNA3 , A0A1Z5RP37 , A0A1Z5RN96
Pfam PF01416
Panther DB PTHR11142 PTHR11142:SF0
NCBI CDD KOG4393; Predicted pseudouridylate synthase
KEGG Orthology K06173; truA, tRNA pseudouridine38-40 synthase
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT3G06950 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os05g19954.1,LOC_Os05g19954.2 : tRNA pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a020840
Brachypodium KQJ96782 , KQJ96783
Barley HORVU1Hr1G031370.7 , HORVU1Hr1G031370.6 , HORVU1Hr1G031370.9 , HORVU1Hr1G031370.22 , HORVU1Hr1G031370.14 , HORVU1Hr1G031370.16 , HORVU1Hr1G031370.11 , HORVU1Hr1G031370.10 , HORVU1Hr1G031370.12 , HORVU1Hr1G031370.19 , HORVU1Hr1G031370.18 , HORVU1Hr1G031370.1 , HORVU1Hr1G031370.3 , HORVU1Hr1G031370.5 , HORVU1Hr1G031370.4 , HORVU1Hr1G031370.8
Wheat TraesCS1D02G124100 , TraesCS1D02G124100 , TraesCS1B02G152500 , TraesCS1B02G152500 , TraesCS1A02G134500 , TraesCS1A02G134500 , TraesCS1A02G134500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G128750 - -
2 Sobic.002G192700 hydrolase, alpha/beta fold family domain containing protein, expressed -
3 Sobic.001G370100 R3H domain containing protein, expressed -
4 Sobic.001G177500 - -
5 Sobic.009G237300 - -
6 Sobic.010G266000 uncharacterized protein(PubMedID : 28640841)@expressed protein -
7 Sobic.003G064150 - -
8 Sobic.002G289701 - -
9 Sobic.001G489225 - -
10 Sobic.006G226900 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
11 Sobic.002G013500 pentatricopeptide, putative, expressed -
12 Sobic.002G227800 gibberellin receptor, putative, expressed -
13 Sobic.007G129900 expressed protein -
14 Sobic.001G158966 - -
15 Sobic.002G085700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
16 Sobic.008G078966 - -
17 Sobic.005G041700 - -
18 Sobic.008G053000 receptor-like protein kinase 5 precursor, putative, expressed -
19 Sobic.005G201800 OsFBX230 - F-box domain containing protein, expressed -
20 Sobic.010G140800 - -


Gene co-expression network
sample Sobic004G193200 Sobic004G193200 Sobic002G128750 Sobic002G128750 Sobic004G193200--Sobic002G128750 Sobic002G192700 Sobic002G192700 Sobic004G193200--Sobic002G192700 Sobic001G370100 Sobic001G370100 Sobic004G193200--Sobic001G370100 Sobic001G177500 Sobic001G177500 Sobic004G193200--Sobic001G177500 Sobic009G237300 Sobic009G237300 Sobic004G193200--Sobic009G237300 Sobic010G266000 Sobic010G266000 Sobic004G193200--Sobic010G266000 Sobic003G064150 Sobic003G064150 Sobic004G193200--Sobic003G064150 Sobic002G289701 Sobic002G289701 Sobic004G193200--Sobic002G289701 Sobic001G489225 Sobic001G489225 Sobic004G193200--Sobic001G489225 Sobic002G128750--Sobic001G177500 Sobic002G128750--Sobic001G370100 Sobic002G227800 Sobic002G227800 Sobic002G128750--Sobic002G227800 Sobic002G013500 Sobic002G013500 Sobic002G128750--Sobic002G013500 Sobic002G085700 Sobic002G085700 Sobic002G128750--Sobic002G085700 Sobic007G100900 Sobic007G100900 Sobic002G128750--Sobic007G100900 Sobic002G128750--Sobic002G289701 Sobic006G088500 Sobic006G088500 Sobic002G128750--Sobic006G088500 Sobic001G535300 Sobic001G535300 Sobic002G128750--Sobic001G535300 Sobic002G192700--Sobic003G064150 Sobic008G097000 Sobic008G097000 Sobic002G192700--Sobic008G097000 Sobic002G277900 Sobic002G277900 Sobic002G192700--Sobic002G277900 Sobic003G008100 Sobic003G008100 Sobic002G192700--Sobic003G008100 Sobic002G192700--Sobic010G266000 Sobic005G050900 Sobic005G050900 Sobic002G192700--Sobic005G050900 Sobic002G192700--Sobic001G489225 Sobic002G192700--Sobic004G193200 Sobic001G158966 Sobic001G158966 Sobic002G192700--Sobic001G158966 Sobic001G370100--Sobic001G177500 Sobic004G327100 Sobic004G327100 Sobic001G370100--Sobic004G327100 Sobic007G027400 Sobic007G027400 Sobic001G370100--Sobic007G027400 Sobic001G045300 Sobic001G045300 Sobic001G370100--Sobic001G045300 Sobic001G358101 Sobic001G358101 Sobic001G370100--Sobic001G358101 Sobic002G046500 Sobic002G046500 Sobic001G370100--Sobic002G046500 Sobic003G190701 Sobic003G190701 Sobic001G370100--Sobic003G190701 Sobic010G140800 Sobic010G140800 Sobic001G370100--Sobic010G140800 Sobic004G162800 Sobic004G162800 Sobic001G370100--Sobic004G162800 Sobic001G177500--Sobic001G370100 Sobic001G177500--Sobic010G140800 Sobic006G076700 Sobic006G076700 Sobic001G177500--Sobic006G076700 Sobic009G159800 Sobic009G159800 Sobic001G177500--Sobic009G159800 Sobic001G234700 Sobic001G234700 Sobic001G177500--Sobic001G234700 Sobic009G125700 Sobic009G125700 Sobic009G237300--Sobic009G125700 Sobic009G237300--Sobic001G234700 Sobic010G273200 Sobic010G273200 Sobic010G266000--Sobic010G273200 Sobic001G152240 Sobic001G152240 Sobic010G266000--Sobic001G152240 Sobic002G103400 Sobic002G103400 Sobic010G266000--Sobic002G103400 Sobic010G091750 Sobic010G091750 Sobic010G266000--Sobic010G091750 Sobic010G103300 Sobic010G103300 Sobic010G266000--Sobic010G103300 Sobic003G060900 Sobic003G060900 Sobic010G266000--Sobic003G060900 Sobic005G144101 Sobic005G144101 Sobic010G266000--Sobic005G144101 Sobic007G087500 Sobic007G087500 Sobic010G266000--Sobic007G087500 Sobic008G053700 Sobic008G053700 Sobic010G266000--Sobic008G053700 Sobic003G064150--Sobic005G050900 Sobic005G029866 Sobic005G029866 Sobic003G064150--Sobic005G029866 Sobic003G064150--Sobic009G125700 Sobic003G064150--Sobic001G158966 Sobic003G064150--Sobic003G190701 Sobic004G184900 Sobic004G184900 Sobic003G064150--Sobic004G184900 Sobic005G201800 Sobic005G201800 Sobic003G064150--Sobic005G201800 Sobic003G064150--Sobic001G234700 Sobic008G045232 Sobic008G045232 Sobic002G289701--Sobic008G045232 Sobic002G191300 Sobic002G191300 Sobic002G289701--Sobic002G191300 Sobic005G030200 Sobic005G030200 Sobic002G289701--Sobic005G030200 Sobic001G189800 Sobic001G189800 Sobic002G289701--Sobic001G189800 Sobic002G289701--Sobic003G190701 Sobic002G289701--Sobic009G125700 Sobic008G045100 Sobic008G045100 Sobic002G289701--Sobic008G045100 Sobic002G289701--Sobic001G234700 Sobic001G489225--Sobic002G013500 Sobic001G200400 Sobic001G200400 Sobic001G489225--Sobic001G200400 Sobic001G489225--Sobic006G076700 Sobic001G489225--Sobic001G370100 Sobic001G489225--Sobic001G234700
Octagon: transcription factors


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