Gene annotation
Transcriptome id Sobic.001G370100.1,Sobic.001G370100.2
Synonym Sb01g035210
Functional annotation R3H domain containing protein, expressed
UniProt C5WZR8 , A0A1B6QN73
Pfam PF12752 PF01424
Panther DB PTHR15672 PTHR15672:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g01050.2 : R3H domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002491 , Zm00025a052356
Brachypodium -
Barley -
Wheat TraesCS3B02G101900 , TraesCS3D02G086700 , TraesCS3A02G086400
Populus -


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cDNA sequences
Sobic.001G370100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G177500 - -
2 Sobic.004G327100 atATG18b, putative, expressed K17908: WIPI1_2, autophagy-related protein 18
3 Sobic.007G027400 MBTB16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
4 Sobic.001G045300 ubiquitin family protein, putative, expressed -
5 Sobic.001G358101 - -
6 Sobic.002G046500 gibberellin 20 oxidase 1-B, putative, expressed -
7 Sobic.003G190701 - -
8 Sobic.010G140800 - -
9 Sobic.004G162800 - -
10 Sobic.004G090900 nuclear ribonuclease Z, putative, expressed K00784: ribonuclease Z
11 Sobic.009G125700 hypothetical protein -
12 Sobic.003G245101 - -
13 Sobic.001G234700 AP2 domain containing protein, expressed -
14 Sobic.001G234700 AP2 domain containing protein, expressed -
15 Sobic.001G234700 AP2 domain containing protein, expressed -
16 Sobic.001G234700 AP2 domain containing protein, expressed -
17 Sobic.001G234700 AP2 domain containing protein, expressed -
18 Sobic.001G234700 AP2 domain containing protein, expressed -
19 Sobic.001G234700 AP2 domain containing protein, expressed -
20 Sobic.001G234700 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G370100 Sobic001G370100 Sobic001G177500 Sobic001G177500 Sobic001G370100--Sobic001G177500 Sobic004G327100 Sobic004G327100 Sobic001G370100--Sobic004G327100 Sobic007G027400 Sobic007G027400 Sobic001G370100--Sobic007G027400 Sobic001G045300 Sobic001G045300 Sobic001G370100--Sobic001G045300 Sobic001G358101 Sobic001G358101 Sobic001G370100--Sobic001G358101 Sobic002G046500 Sobic002G046500 Sobic001G370100--Sobic002G046500 Sobic003G190701 Sobic003G190701 Sobic001G370100--Sobic003G190701 Sobic010G140800 Sobic010G140800 Sobic001G370100--Sobic010G140800 Sobic004G162800 Sobic004G162800 Sobic001G370100--Sobic004G162800 Sobic001G177500--Sobic001G370100 Sobic001G177500--Sobic010G140800 Sobic006G076700 Sobic006G076700 Sobic001G177500--Sobic006G076700 Sobic009G159800 Sobic009G159800 Sobic001G177500--Sobic009G159800 Sobic001G234700 Sobic001G234700 Sobic001G177500--Sobic001G234700 Sobic004G122700 Sobic004G122700 Sobic004G327100--Sobic004G122700 Sobic005G207550 Sobic005G207550 Sobic004G327100--Sobic005G207550 Sobic006G137900 Sobic006G137900 Sobic004G327100--Sobic006G137900 Sobic008G008701 Sobic008G008701 Sobic004G327100--Sobic008G008701 Sobic001G138500 Sobic001G138500 Sobic004G327100--Sobic001G138500 Sobic008G008601 Sobic008G008601 Sobic004G327100--Sobic008G008601 Sobic001G190600 Sobic001G190600 Sobic004G327100--Sobic001G190600 Sobic001G452300 Sobic001G452300 Sobic004G327100--Sobic001G452300 Sobic004G090900 Sobic004G090900 Sobic004G327100--Sobic004G090900 Sobic007G027400--Sobic001G045300 Sobic007G027400--Sobic002G046500 Sobic007G027400--Sobic001G358101 Sobic007G027400--Sobic004G090900 Sobic007G027400--Sobic004G162800 Sobic003G245101 Sobic003G245101 Sobic007G027400--Sobic003G245101 Sobic002G084100 Sobic002G084100 Sobic007G027400--Sobic002G084100 Sobic007G027400--Sobic003G190701 Sobic007G027400--Sobic008G008701 Sobic001G045300--Sobic007G027400 Sobic001G045300--Sobic002G046500 Sobic001G045300--Sobic004G090900 Sobic001G045300--Sobic001G358101 Sobic001G045300--Sobic004G162800 Sobic001G045300--Sobic003G245101 Sobic001G045300--Sobic002G084100 Sobic001G045300--Sobic008G008701 Sobic001G045300--Sobic003G190701 Sobic001G358101--Sobic004G162800 Sobic001G358101--Sobic003G190701 Sobic001G358101--Sobic003G245101 Sobic001G358101--Sobic001G234700 Sobic002G046500--Sobic004G090900 Sobic002G046500--Sobic001G045300 Sobic002G046500--Sobic007G027400 Sobic002G046500--Sobic002G084100 Sobic002G046500--Sobic003G245101 Sobic002G046500--Sobic004G162800 Sobic002G046500--Sobic001G358101 Sobic002G289601 Sobic002G289601 Sobic002G046500--Sobic002G289601 Sobic005G014600 Sobic005G014600 Sobic002G046500--Sobic005G014600 Sobic003G190701--Sobic001G358101 Sobic003G190701--Sobic004G162800 Sobic003G190701--Sobic001G234700 Sobic010G140800--Sobic009G159800 Sobic005G041700 Sobic005G041700 Sobic010G140800--Sobic005G041700 Sobic010G140800--Sobic003G245101 Sobic010G140800--Sobic004G162800 Sobic010G140800--Sobic001G234700 Sobic004G162800--Sobic003G245101 Sobic004G162800--Sobic001G358101 Sobic004G162800--Sobic003G190701 Sobic004G162800--Sobic002G084100 Sobic004G162800--Sobic009G159800 Sobic004G162800--Sobic001G234700
Octagon: transcription factors


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