Gene annotation
Transcriptome id Sobic.001G248600.1,Sobic.001G248600.3,Sobic.001G248600.2
Synonym GA biosynthetic enzyme, ABC33, ATCPS1, SbCPS1, CPS, CPS1, Sb01g021990, GA1
Functional annotation "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants" (PubMedID : 24924234)
ent-kaurene synthase, chloroplast precursor, putative, expressed
UniProt A0A1Z5S7S9 , A0A1B6QKU3 , A0A1Z5S7J8
Pfam PF03936 PF01397
Panther DB PTHR31739 PTHR31739:SF4
NCBI CDD -
KEGG Orthology K04120; ent-copalyl diphosphate synthase
Gene Ontology GO:0016829; lyase activity GO:0010333terpene synthase activity GO:0000287magnesium ion binding GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G02780 : Terpenoid cyclases/Protein prenyltransferases superfamily protein
RAP-DB (Rice) LOC_Os02g17780.1 : ent-kaurene synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a006928 , Zm00025a003058
Brachypodium -
Barley -
Wheat TraesCS1B02G139400 , TraesCS1A02G119900 , TraesCS1A02G119900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G128750 - -
2 Sobic.002G227800 gibberellin receptor, putative, expressed -
3 Sobic.005G135500 chalcone and stilbene synthases, putative, expressed -
4 Sobic.006G088500 OsFBX135 - F-box domain containing protein, expressed -
5 Sobic.002G044900 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.002G085700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
7 Sobic.003G118700 - -
8 Sobic.001G177500 - -
9 Sobic.001G370100 R3H domain containing protein, expressed -
10 Sobic.004G193200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
11 Sobic.002G401301 - -
12 Sobic.003G326100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
13 Sobic.007G100900 - -
14 Sobic.008G053000 receptor-like protein kinase 5 precursor, putative, expressed -
15 Sobic.002G188800 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
16 Sobic.004G274000 STE_MEK_ste7_MAP2K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.008G096401 - -
19 Sobic.004G052700 hypothetical protein -
20 Sobic.004G181100 expressed protein -


Gene co-expression network
sample Sobic001G248600 Sobic001G248600 Sobic002G128750 Sobic002G128750 Sobic001G248600--Sobic002G128750 Sobic002G227800 Sobic002G227800 Sobic001G248600--Sobic002G227800 Sobic005G135500 Sobic005G135500 Sobic001G248600--Sobic005G135500 Sobic006G088500 Sobic006G088500 Sobic001G248600--Sobic006G088500 Sobic002G044900 Sobic002G044900 Sobic001G248600--Sobic002G044900 Sobic002G085700 Sobic002G085700 Sobic001G248600--Sobic002G085700 Sobic003G118700 Sobic003G118700 Sobic001G248600--Sobic003G118700 Sobic001G177500 Sobic001G177500 Sobic001G248600--Sobic001G177500 Sobic001G370100 Sobic001G370100 Sobic001G248600--Sobic001G370100 Sobic002G128750--Sobic001G177500 Sobic002G128750--Sobic001G370100 Sobic002G128750--Sobic002G227800 Sobic002G013500 Sobic002G013500 Sobic002G128750--Sobic002G013500 Sobic002G128750--Sobic002G085700 Sobic007G100900 Sobic007G100900 Sobic002G128750--Sobic007G100900 Sobic002G289701 Sobic002G289701 Sobic002G128750--Sobic002G289701 Sobic002G128750--Sobic006G088500 Sobic001G535300 Sobic001G535300 Sobic002G128750--Sobic001G535300 Sobic010G146350 Sobic010G146350 Sobic002G227800--Sobic010G146350 Sobic005G207600 Sobic005G207600 Sobic002G227800--Sobic005G207600 Sobic007G120600 Sobic007G120600 Sobic002G227800--Sobic007G120600 Sobic010G228200 Sobic010G228200 Sobic002G227800--Sobic010G228200 Sobic001G060001 Sobic001G060001 Sobic002G227800--Sobic001G060001 Sobic004G052700 Sobic004G052700 Sobic002G227800--Sobic004G052700 Sobic008G096401 Sobic008G096401 Sobic002G227800--Sobic008G096401 Sobic003G023100 Sobic003G023100 Sobic002G227800--Sobic003G023100 Sobic001G190600 Sobic001G190600 Sobic002G227800--Sobic001G190600 Sobic002G267050 Sobic002G267050 Sobic005G135500--Sobic002G267050 Sobic010G212600 Sobic010G212600 Sobic005G135500--Sobic010G212600 Sobic005G135500--Sobic002G044900 Sobic003G210701 Sobic003G210701 Sobic005G135500--Sobic003G210701 Sobic002G067050 Sobic002G067050 Sobic005G135500--Sobic002G067050 Sobic005G201800 Sobic005G201800 Sobic005G135500--Sobic005G201800 Sobic001G152500 Sobic001G152500 Sobic005G135500--Sobic001G152500 Sobic003G002800 Sobic003G002800 Sobic005G135500--Sobic003G002800 Sobic001G033701 Sobic001G033701 Sobic005G135500--Sobic001G033701 Sobic006G088500--Sobic007G120600 Sobic006G088500--Sobic004G052700 Sobic006G088500--Sobic008G096401 Sobic006G088500--Sobic001G060001 Sobic010G267651 Sobic010G267651 Sobic006G088500--Sobic010G267651 Sobic004G181100 Sobic004G181100 Sobic006G088500--Sobic004G181100 Sobic002G188800 Sobic002G188800 Sobic006G088500--Sobic002G188800 Sobic006G088500--Sobic010G146350 Sobic006G088500--Sobic005G207600 Sobic002G401301 Sobic002G401301 Sobic002G044900--Sobic002G401301 Sobic002G044900--Sobic001G060001 Sobic002G044900--Sobic004G052700 Sobic002G044900--Sobic008G096401 Sobic002G044900--Sobic007G120600 Sobic002G044900--Sobic004G181100 Sobic003G326100 Sobic003G326100 Sobic002G044900--Sobic003G326100 Sobic002G044900--Sobic005G207600 Sobic004G274000 Sobic004G274000 Sobic002G044900--Sobic004G274000 Sobic002G085700--Sobic001G177500 Sobic010G140800 Sobic010G140800 Sobic002G085700--Sobic010G140800 Sobic006G258200 Sobic006G258200 Sobic002G085700--Sobic006G258200 Sobic009G159800 Sobic009G159800 Sobic002G085700--Sobic009G159800 Sobic010G081500 Sobic010G081500 Sobic002G085700--Sobic010G081500 Sobic002G085700--Sobic007G100900 Sobic002G191300 Sobic002G191300 Sobic002G085700--Sobic002G191300 Sobic006G076700 Sobic006G076700 Sobic002G085700--Sobic006G076700 Sobic002G289601 Sobic002G289601 Sobic002G085700--Sobic002G289601 Sobic003G118700--Sobic003G326100 Sobic003G118700--Sobic002G188800 Sobic003G118700--Sobic004G181100 Sobic003G118700--Sobic008G096401 Sobic003G118700--Sobic004G052700 Sobic006G042800 Sobic006G042800 Sobic003G118700--Sobic006G042800 Sobic003G118700--Sobic007G120600 Sobic002G159400 Sobic002G159400 Sobic003G118700--Sobic002G159400 Sobic003G118700--Sobic001G060001 Sobic001G177500--Sobic001G370100 Sobic001G177500--Sobic010G140800 Sobic001G177500--Sobic006G076700 Sobic001G177500--Sobic009G159800 Sobic001G234700 Sobic001G234700 Sobic001G177500--Sobic001G234700 Sobic001G370100--Sobic001G177500 Sobic004G327100 Sobic004G327100 Sobic001G370100--Sobic004G327100 Sobic007G027400 Sobic007G027400 Sobic001G370100--Sobic007G027400 Sobic001G045300 Sobic001G045300 Sobic001G370100--Sobic001G045300 Sobic001G358101 Sobic001G358101 Sobic001G370100--Sobic001G358101 Sobic002G046500 Sobic002G046500 Sobic001G370100--Sobic002G046500 Sobic003G190701 Sobic003G190701 Sobic001G370100--Sobic003G190701 Sobic001G370100--Sobic010G140800 Sobic004G162800 Sobic004G162800 Sobic001G370100--Sobic004G162800
Octagon: transcription factors


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