Gene annotation
Transcriptome id Sobic.006G045200.2
Synonym
Functional annotation -
UniProt C6JSL1 , A0A109ND38 , A0A1Z5RC54
Pfam PF00271 PF00012
Panther DB PTHR24031 PTHR24031:SF50
NCBI CDD KOG0344; ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01440 : DEAD/DEAH box RNA helicase family protein
RAP-DB (Rice) LOC_Os02g48100.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a021761 , Zm00025a021764 , Zm00025a032496
Brachypodium KQK00983 , KQK00984 , KQK00985 , KQK00988
Barley -
Wheat TraesCS6A02G276600 , TraesCS6A02G276600 , TraesCS6D02G256900 , TraesCS6D02G256900 , TraesCS6D02G256900 , TraesCS6D02G256900 , TraesCS6B02G304100 , TraesCS6B02G304100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G535300 - -
2 Sobic.002G128750 - -
3 Sobic.007G022400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR31 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
4 Sobic.004G193200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
5 Sobic.001G242350 - -
6 Sobic.001G444100 peptide transporter, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
7 Sobic.001G177500 - -
8 Sobic.002G013500 pentatricopeptide, putative, expressed -
9 Sobic.005G204400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
10 Sobic.001G327400 - -
11 Sobic.006G062200 DNA cross-link repair 1A protein, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
12 Sobic.009G063450 - -
13 Sobic.010G266000 uncharacterized protein(PubMedID : 28640841)@expressed protein -
14 Sobic.007G202700 exo70 exocyst complex subunit, putative, expressed -
15 Sobic.001G370100 R3H domain containing protein, expressed -
16 Sobic.001G116200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.010G220700 aluminum-activated malate transporter, putative, expressed -
18 Sobic.002G085700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
19 Sobic.002G227800 gibberellin receptor, putative, expressed -
20 Sobic.001G422600 expressed protein -


Gene co-expression network
sample Sobic006G045200 Sobic006G045200 Sobic001G535300 Sobic001G535300 Sobic006G045200--Sobic001G535300 Sobic002G128750 Sobic002G128750 Sobic006G045200--Sobic002G128750 Sobic007G022400 Sobic007G022400 Sobic006G045200--Sobic007G022400 Sobic004G193200 Sobic004G193200 Sobic006G045200--Sobic004G193200 Sobic001G242350 Sobic001G242350 Sobic006G045200--Sobic001G242350 Sobic001G444100 Sobic001G444100 Sobic006G045200--Sobic001G444100 Sobic001G177500 Sobic001G177500 Sobic006G045200--Sobic001G177500 Sobic002G013500 Sobic002G013500 Sobic006G045200--Sobic002G013500 Sobic005G204400 Sobic005G204400 Sobic006G045200--Sobic005G204400 Sobic001G535300--Sobic002G128750 Sobic001G535300--Sobic007G022400 Sobic009G063450 Sobic009G063450 Sobic001G535300--Sobic009G063450 Sobic003G073700 Sobic003G073700 Sobic001G535300--Sobic003G073700 Sobic001G535300--Sobic006G045200 Sobic010G187201 Sobic010G187201 Sobic001G535300--Sobic010G187201 Sobic001G535300--Sobic001G177500 Sobic001G535300--Sobic002G013500 Sobic002G085700 Sobic002G085700 Sobic001G535300--Sobic002G085700 Sobic002G128750--Sobic001G177500 Sobic001G370100 Sobic001G370100 Sobic002G128750--Sobic001G370100 Sobic002G227800 Sobic002G227800 Sobic002G128750--Sobic002G227800 Sobic002G128750--Sobic002G013500 Sobic002G128750--Sobic002G085700 Sobic007G100900 Sobic007G100900 Sobic002G128750--Sobic007G100900 Sobic002G289701 Sobic002G289701 Sobic002G128750--Sobic002G289701 Sobic006G088500 Sobic006G088500 Sobic002G128750--Sobic006G088500 Sobic002G128750--Sobic001G535300 Sobic007G022400--Sobic001G535300 Sobic007G022400--Sobic002G128750 Sobic007G022400--Sobic006G045200 Sobic008G038700 Sobic008G038700 Sobic007G022400--Sobic008G038700 Sobic007G022400--Sobic003G073700 Sobic007G022400--Sobic009G063450 Sobic005G031800 Sobic005G031800 Sobic007G022400--Sobic005G031800 Sobic005G108300 Sobic005G108300 Sobic007G022400--Sobic005G108300 Sobic006G062200 Sobic006G062200 Sobic007G022400--Sobic006G062200 Sobic004G193200--Sobic002G128750 Sobic002G192700 Sobic002G192700 Sobic004G193200--Sobic002G192700 Sobic004G193200--Sobic001G370100 Sobic004G193200--Sobic001G177500 Sobic009G237300 Sobic009G237300 Sobic004G193200--Sobic009G237300 Sobic010G266000 Sobic010G266000 Sobic004G193200--Sobic010G266000 Sobic003G064150 Sobic003G064150 Sobic004G193200--Sobic003G064150 Sobic004G193200--Sobic002G289701 Sobic001G489225 Sobic001G489225 Sobic004G193200--Sobic001G489225 Sobic010G228300 Sobic010G228300 Sobic001G242350--Sobic010G228300 Sobic007G215300 Sobic007G215300 Sobic001G242350--Sobic007G215300 Sobic001G242350--Sobic005G204400 Sobic007G095850 Sobic007G095850 Sobic001G242350--Sobic007G095850 Sobic001G213150 Sobic001G213150 Sobic001G242350--Sobic001G213150 Sobic003G060900 Sobic003G060900 Sobic001G242350--Sobic003G060900 Sobic009G142700 Sobic009G142700 Sobic001G242350--Sobic009G142700 Sobic009G029800 Sobic009G029800 Sobic001G242350--Sobic009G029800 Sobic001G285700 Sobic001G285700 Sobic001G242350--Sobic001G285700 Sobic001G327400 Sobic001G327400 Sobic001G444100--Sobic001G327400 Sobic004G159600 Sobic004G159600 Sobic001G444100--Sobic004G159600 Sobic004G036500 Sobic004G036500 Sobic001G444100--Sobic004G036500 Sobic001G444100--Sobic002G013500 Sobic002G252600 Sobic002G252600 Sobic001G444100--Sobic002G252600 Sobic001G444100--Sobic006G045200 Sobic001G444100--Sobic001G370100 Sobic003G298500 Sobic003G298500 Sobic001G444100--Sobic003G298500 Sobic001G444100--Sobic001G177500 Sobic001G177500--Sobic001G370100 Sobic010G140800 Sobic010G140800 Sobic001G177500--Sobic010G140800 Sobic006G076700 Sobic006G076700 Sobic001G177500--Sobic006G076700 Sobic009G159800 Sobic009G159800 Sobic001G177500--Sobic009G159800 Sobic001G234700 Sobic001G234700 Sobic001G177500--Sobic001G234700 Sobic002G013500--Sobic007G100900 Sobic002G013500--Sobic006G076700 Sobic004G184900 Sobic004G184900 Sobic002G013500--Sobic004G184900 Sobic003G046000 Sobic003G046000 Sobic002G013500--Sobic003G046000 Sobic008G053700 Sobic008G053700 Sobic002G013500--Sobic008G053700 Sobic008G069901 Sobic008G069901 Sobic002G013500--Sobic008G069901 Sobic002G013500--Sobic001G177500 Sobic005G014600 Sobic005G014600 Sobic002G013500--Sobic005G014600 Sobic009G113300 Sobic009G113300 Sobic002G013500--Sobic009G113300 Sobic005G204400--Sobic007G215300 Sobic005G204400--Sobic001G213150 Sobic005G204400--Sobic009G029800 Sobic005G204400--Sobic003G060900 Sobic010G273200 Sobic010G273200 Sobic005G204400--Sobic010G273200 Sobic005G144101 Sobic005G144101 Sobic005G204400--Sobic005G144101 Sobic001G152240 Sobic001G152240 Sobic005G204400--Sobic001G152240 Sobic002G103400 Sobic002G103400 Sobic005G204400--Sobic002G103400 Sobic010G091750 Sobic010G091750 Sobic005G204400--Sobic010G091750
Octagon: transcription factors


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