Gene annotation
Transcriptome id Sobic.001G116200.2,Sobic.001G116200.1
Synonym Sb01g010260
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5WN26
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF479
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01570 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g50500.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007868
Brachypodium PNT74265 , PNT74264 , PNT74261 , PNT74263 , PNT74262
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G193200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
2 Sobic.007G088500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.002G128750 - -
4 Sobic.003G073700 OsMADS65 - MADS-box family gene with MIKC , type-box, expressed -
5 Sobic.001G248600 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed K04120: ent-copalyl diphosphate synthase
6 Sobic.001G535300 - -
7 Sobic.006G045200 - -
8 Sobic.002G335700 OsFBX252 - F-box domain containing protein, expressed -
9 Sobic.004G358500 PRLI-interacting factor A, putative, expressed -
10 Sobic.001G422600 expressed protein -
11 Sobic.007G022400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR31 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
12 Sobic.001G379200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
13 Sobic.004G143100 PPR repeat domain containing protein, putative, expressed -
14 Sobic.006G062200 DNA cross-link repair 1A protein, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
15 Sobic.010G115300 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
16 Sobic.005G076000 expressed protein -
17 Sobic.009G063450 - -
18 Sobic.002G192700 hydrolase, alpha/beta fold family domain containing protein, expressed -
19 Sobic.001G252200 expressed protein K11490: condensin-2 complex subunit H2
20 Sobic.006G226900 leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase


Gene co-expression network
sample Sobic001G116200 Sobic001G116200 Sobic004G193200 Sobic004G193200 Sobic001G116200--Sobic004G193200 Sobic007G088500 Sobic007G088500 Sobic001G116200--Sobic007G088500 Sobic002G128750 Sobic002G128750 Sobic001G116200--Sobic002G128750 Sobic003G073700 Sobic003G073700 Sobic001G116200--Sobic003G073700 Sobic001G248600 Sobic001G248600 Sobic001G116200--Sobic001G248600 Sobic001G535300 Sobic001G535300 Sobic001G116200--Sobic001G535300 Sobic006G045200 Sobic006G045200 Sobic001G116200--Sobic006G045200 Sobic002G335700 Sobic002G335700 Sobic001G116200--Sobic002G335700 Sobic004G358500 Sobic004G358500 Sobic001G116200--Sobic004G358500 Sobic004G193200--Sobic002G128750 Sobic002G192700 Sobic002G192700 Sobic004G193200--Sobic002G192700 Sobic001G370100 Sobic001G370100 Sobic004G193200--Sobic001G370100 Sobic001G177500 Sobic001G177500 Sobic004G193200--Sobic001G177500 Sobic009G237300 Sobic009G237300 Sobic004G193200--Sobic009G237300 Sobic010G266000 Sobic010G266000 Sobic004G193200--Sobic010G266000 Sobic003G064150 Sobic003G064150 Sobic004G193200--Sobic003G064150 Sobic002G289701 Sobic002G289701 Sobic004G193200--Sobic002G289701 Sobic001G489225 Sobic001G489225 Sobic004G193200--Sobic001G489225 Sobic007G088500--Sobic001G116200 Sobic007G088500--Sobic002G128750 Sobic007G088500--Sobic001G248600 Sobic007G088500--Sobic004G193200 Sobic006G062200 Sobic006G062200 Sobic007G088500--Sobic006G062200 Sobic009G063450 Sobic009G063450 Sobic007G088500--Sobic009G063450 Sobic007G088500--Sobic001G535300 Sobic007G088500--Sobic003G073700 Sobic010G115300 Sobic010G115300 Sobic007G088500--Sobic010G115300 Sobic002G128750--Sobic001G177500 Sobic002G128750--Sobic001G370100 Sobic002G227800 Sobic002G227800 Sobic002G128750--Sobic002G227800 Sobic002G013500 Sobic002G013500 Sobic002G128750--Sobic002G013500 Sobic002G085700 Sobic002G085700 Sobic002G128750--Sobic002G085700 Sobic007G100900 Sobic007G100900 Sobic002G128750--Sobic007G100900 Sobic002G128750--Sobic002G289701 Sobic006G088500 Sobic006G088500 Sobic002G128750--Sobic006G088500 Sobic002G128750--Sobic001G535300 Sobic010G187201 Sobic010G187201 Sobic003G073700--Sobic010G187201 Sobic003G073700--Sobic001G535300 Sobic006G281600 Sobic006G281600 Sobic003G073700--Sobic006G281600 Sobic007G022400 Sobic007G022400 Sobic003G073700--Sobic007G022400 Sobic003G167800 Sobic003G167800 Sobic003G073700--Sobic003G167800 Sobic003G073700--Sobic001G116200 Sobic003G244800 Sobic003G244800 Sobic003G073700--Sobic003G244800 Sobic003G073700--Sobic002G128750 Sobic001G252200 Sobic001G252200 Sobic003G073700--Sobic001G252200 Sobic001G248600--Sobic002G128750 Sobic001G248600--Sobic002G227800 Sobic005G135500 Sobic005G135500 Sobic001G248600--Sobic005G135500 Sobic001G248600--Sobic006G088500 Sobic002G044900 Sobic002G044900 Sobic001G248600--Sobic002G044900 Sobic001G248600--Sobic002G085700 Sobic003G118700 Sobic003G118700 Sobic001G248600--Sobic003G118700 Sobic001G248600--Sobic001G177500 Sobic001G248600--Sobic001G370100 Sobic001G535300--Sobic002G128750 Sobic001G535300--Sobic007G022400 Sobic001G535300--Sobic009G063450 Sobic001G535300--Sobic003G073700 Sobic001G535300--Sobic006G045200 Sobic001G535300--Sobic010G187201 Sobic001G535300--Sobic001G177500 Sobic001G535300--Sobic002G013500 Sobic001G535300--Sobic002G085700 Sobic006G045200--Sobic001G535300 Sobic006G045200--Sobic002G128750 Sobic006G045200--Sobic007G022400 Sobic006G045200--Sobic004G193200 Sobic001G242350 Sobic001G242350 Sobic006G045200--Sobic001G242350 Sobic001G444100 Sobic001G444100 Sobic006G045200--Sobic001G444100 Sobic006G045200--Sobic001G177500 Sobic006G045200--Sobic002G013500 Sobic005G204400 Sobic005G204400 Sobic006G045200--Sobic005G204400 Sobic008G116500 Sobic008G116500 Sobic002G335700--Sobic008G116500 Sobic002G061400 Sobic002G061400 Sobic002G335700--Sobic002G061400 Sobic007G011400 Sobic007G011400 Sobic002G335700--Sobic007G011400 Sobic001G094000 Sobic001G094000 Sobic002G335700--Sobic001G094000 Sobic007G188900 Sobic007G188900 Sobic002G335700--Sobic007G188900 Sobic009G104300 Sobic009G104300 Sobic002G335700--Sobic009G104300 Sobic008G117200 Sobic008G117200 Sobic002G335700--Sobic008G117200 Sobic003G315332 Sobic003G315332 Sobic002G335700--Sobic003G315332 Sobic004G169501 Sobic004G169501 Sobic002G335700--Sobic004G169501 Sobic004G358500--Sobic001G116200 Sobic002G290300 Sobic002G290300 Sobic004G358500--Sobic002G290300 Sobic003G252000 Sobic003G252000 Sobic004G358500--Sobic003G252000 Sobic002G384150 Sobic002G384150 Sobic004G358500--Sobic002G384150 Sobic001G453800 Sobic001G453800 Sobic004G358500--Sobic001G453800 Sobic004G271200 Sobic004G271200 Sobic004G358500--Sobic004G271200 Sobic004G146150 Sobic004G146150 Sobic004G358500--Sobic004G146150 Sobic001G362701 Sobic001G362701 Sobic004G358500--Sobic001G362701 Sobic003G102300 Sobic003G102300 Sobic004G358500--Sobic003G102300
Octagon: transcription factors


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