Gene annotation
Transcriptome id Sobic.003G073700.2,Sobic.003G073700.3,Sobic.003G073700.4
Synonym SOC1, ATSOC1, AGL20
Functional annotation OsMADS65 - MADS-box family gene with MIKC* type-box, expressed
UniProt A0A1W0VW12 , A0A1W0VW33 , A0A1W0VW50
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF213
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G11880 : AGAMOUS-like 14
RAP-DB (Rice) LOC_Os01g69850.1 : OsMADS65 - MADS-box family gene with MIKC* type-box, expressed
MaizeGDB (Corn) Zm00025a023522 , Zm00025a005268 , Zm00025a026241
Brachypodium PNT64543 , PNT73501 , PNT73500 , KQK11233
Barley HORVU3Hr1G095240.9 , HORVU3Hr1G095240.8 , HORVU3Hr1G095240.1 , HORVU3Hr1G095240.3 , HORVU3Hr1G095240.2 , HORVU3Hr1G095240.5 , HORVU3Hr1G095240.4 , HORVU3Hr1G095240.7 , HORVU3Hr1G095240.6 , HORVU3Hr1G095080.7 , HORVU3Hr1G095080.6 , HORVU3Hr1G095080.5 , HORVU3Hr1G095080.4 , HORVU3Hr1G095080.3 , HORVU3Hr1G095080.2 , HORVU3Hr1G095080.1
Wheat TraesCS4D02G346300 , TraesCS5B02G396700 , TraesCS4B02G351500 , TraesCS3A02G432900 , TraesCS5D02G401700 , TraesCS5A02G520200 , TraesCS3D02G428000 , TraesCS3B02G470000 , TraesCS5A02G391800 , TraesCS3D02G427700 , TraesCS3A02G434700 , TraesCS3A02G435000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G187201 - -
2 Sobic.001G535300 - -
3 Sobic.006G281600 OsSigP6 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K03100: signal peptidase I
4 Sobic.007G022400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR31 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
5 Sobic.003G167800 DUF630/DUF632 domains containing protein, putative, expressed -
6 Sobic.001G116200 PPR repeat domain containing protein, putative, expressed -
7 Sobic.003G244800 - -
8 Sobic.002G128750 - -
9 Sobic.001G252200 expressed protein K11490: condensin-2 complex subunit H2
10 Sobic.002G335700 OsFBX252 - F-box domain containing protein, expressed -
11 Sobic.002G252600 pob, putative, expressed -
12 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
13 Sobic.004G212800 - -
14 Sobic.004G112500 - -
15 Sobic.001G515600 expressed protein -
16 Sobic.001G243901 - -
17 Sobic.001G345333 - -
18 Sobic.010G248200 KID-containing protein, putative, expressed -
19 Sobic.006G116300 OsFBDUF22 - F-box and DUF domain containing protein, expressed -
20 Sobic.005G117901 - -


Gene co-expression network
sample Sobic003G073700 Sobic003G073700 Sobic010G187201 Sobic010G187201 Sobic003G073700--Sobic010G187201 Sobic001G535300 Sobic001G535300 Sobic003G073700--Sobic001G535300 Sobic006G281600 Sobic006G281600 Sobic003G073700--Sobic006G281600 Sobic007G022400 Sobic007G022400 Sobic003G073700--Sobic007G022400 Sobic003G167800 Sobic003G167800 Sobic003G073700--Sobic003G167800 Sobic001G116200 Sobic001G116200 Sobic003G073700--Sobic001G116200 Sobic003G244800 Sobic003G244800 Sobic003G073700--Sobic003G244800 Sobic002G128750 Sobic002G128750 Sobic003G073700--Sobic002G128750 Sobic001G252200 Sobic001G252200 Sobic003G073700--Sobic001G252200 Sobic010G187201--Sobic003G073700 Sobic010G187201--Sobic001G535300 Sobic010G187201--Sobic006G281600 Sobic010G187201--Sobic007G022400 Sobic008G130601 Sobic008G130601 Sobic010G187201--Sobic008G130601 Sobic002G252600 Sobic002G252600 Sobic010G187201--Sobic002G252600 Sobic010G187201--Sobic003G167800 Sobic002G108800 Sobic002G108800 Sobic010G187201--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic010G187201--Sobic007G156500 Sobic001G535300--Sobic002G128750 Sobic001G535300--Sobic007G022400 Sobic009G063450 Sobic009G063450 Sobic001G535300--Sobic009G063450 Sobic001G535300--Sobic003G073700 Sobic006G045200 Sobic006G045200 Sobic001G535300--Sobic006G045200 Sobic001G535300--Sobic010G187201 Sobic001G177500 Sobic001G177500 Sobic001G535300--Sobic001G177500 Sobic002G013500 Sobic002G013500 Sobic001G535300--Sobic002G013500 Sobic002G085700 Sobic002G085700 Sobic001G535300--Sobic002G085700 Sobic006G281600--Sobic003G073700 Sobic006G281600--Sobic010G187201 Sobic003G044900 Sobic003G044900 Sobic006G281600--Sobic003G044900 Sobic001G024200 Sobic001G024200 Sobic006G281600--Sobic001G024200 Sobic002G221700 Sobic002G221700 Sobic006G281600--Sobic002G221700 Sobic006G116300 Sobic006G116300 Sobic006G281600--Sobic006G116300 Sobic003G117000 Sobic003G117000 Sobic006G281600--Sobic003G117000 Sobic006G133600 Sobic006G133600 Sobic006G281600--Sobic006G133600 SobicK009900 SobicK009900 Sobic006G281600--SobicK009900 Sobic007G022400--Sobic001G535300 Sobic007G022400--Sobic002G128750 Sobic007G022400--Sobic006G045200 Sobic008G038700 Sobic008G038700 Sobic007G022400--Sobic008G038700 Sobic007G022400--Sobic003G073700 Sobic007G022400--Sobic009G063450 Sobic005G031800 Sobic005G031800 Sobic007G022400--Sobic005G031800 Sobic005G108300 Sobic005G108300 Sobic007G022400--Sobic005G108300 Sobic006G062200 Sobic006G062200 Sobic007G022400--Sobic006G062200 Sobic003G167632 Sobic003G167632 Sobic003G167800--Sobic003G167632 Sobic003G057800 Sobic003G057800 Sobic003G167800--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic003G167800--Sobic001G479500 Sobic002G376800 Sobic002G376800 Sobic003G167800--Sobic002G376800 Sobic007G073400 Sobic007G073400 Sobic003G167800--Sobic007G073400 Sobic010G248200 Sobic010G248200 Sobic003G167800--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic003G167800--Sobic008G161401 Sobic009G110366 Sobic009G110366 Sobic003G167800--Sobic009G110366 Sobic001G046600 Sobic001G046600 Sobic003G167800--Sobic001G046600 Sobic004G193200 Sobic004G193200 Sobic001G116200--Sobic004G193200 Sobic007G088500 Sobic007G088500 Sobic001G116200--Sobic007G088500 Sobic001G116200--Sobic002G128750 Sobic001G116200--Sobic003G073700 Sobic001G248600 Sobic001G248600 Sobic001G116200--Sobic001G248600 Sobic001G116200--Sobic001G535300 Sobic001G116200--Sobic006G045200 Sobic002G335700 Sobic002G335700 Sobic001G116200--Sobic002G335700 Sobic004G358500 Sobic004G358500 Sobic001G116200--Sobic004G358500 Sobic002G410200 Sobic002G410200 Sobic003G244800--Sobic002G410200 Sobic004G076732 Sobic004G076732 Sobic003G244800--Sobic004G076732 Sobic003G244800--SobicK009900 Sobic001G253100 Sobic001G253100 Sobic003G244800--Sobic001G253100 Sobic009G209800 Sobic009G209800 Sobic003G244800--Sobic009G209800 Sobic008G009500 Sobic008G009500 Sobic003G244800--Sobic008G009500 Sobic008G042250 Sobic008G042250 Sobic003G244800--Sobic008G042250 Sobic004G212800 Sobic004G212800 Sobic003G244800--Sobic004G212800 Sobic008G049701 Sobic008G049701 Sobic003G244800--Sobic008G049701 Sobic002G128750--Sobic001G177500 Sobic001G370100 Sobic001G370100 Sobic002G128750--Sobic001G370100 Sobic002G227800 Sobic002G227800 Sobic002G128750--Sobic002G227800 Sobic002G128750--Sobic002G013500 Sobic002G128750--Sobic002G085700 Sobic007G100900 Sobic007G100900 Sobic002G128750--Sobic007G100900 Sobic002G289701 Sobic002G289701 Sobic002G128750--Sobic002G289701 Sobic006G088500 Sobic006G088500 Sobic002G128750--Sobic006G088500 Sobic002G128750--Sobic001G535300 Sobic010G115300 Sobic010G115300 Sobic001G252200--Sobic010G115300 Sobic005G110523 Sobic005G110523 Sobic001G252200--Sobic005G110523 Sobic001G252200--Sobic002G335700 Sobic010G208500 Sobic010G208500 Sobic001G252200--Sobic010G208500 Sobic006G246900 Sobic006G246900 Sobic001G252200--Sobic006G246900 Sobic003G023400 Sobic003G023400 Sobic001G252200--Sobic003G023400 Sobic008G167300 Sobic008G167300 Sobic001G252200--Sobic008G167300 Sobic007G037900 Sobic007G037900 Sobic001G252200--Sobic007G037900 Sobic008G068800 Sobic008G068800 Sobic001G252200--Sobic008G068800
Octagon: transcription factors


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