Gene annotation
Transcriptome id Sobic.006G116300.4,Sobic.006G116300.2,Sobic.006G116300.3
Synonym Sb06g019760
Functional annotation OsFBDUF22 - F-box and DUF domain containing protein, expressed
UniProt C5YAC7
Pfam PF03478
Panther DB PTHR34708 PTHR34708:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G57790 : F-box family protein
RAP-DB (Rice) LOC_Os04g39660.1 : OsFBDUF22 - F-box and DUF domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008700 , Zm00025a011029 , Zm00025a004599 , Zm00025a056287 , Zm00025a053021
Brachypodium PNT61285 , PNT61284 , PNT61283
Barley HORVU2Hr1G081960.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G116300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
2 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
3 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
4 Sobic.008G079100 - -
5 Sobic.003G244800 - -
6 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
7 Sobic.009G228201 - -
8 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
9 Sobic.010G073600 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@auxin response factor, putative, expressed -
10 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
11 Sobic.008G009500 pentatricopeptide, putative, expressed -
12 Sobic.010G199800 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
13 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
14 Sobic.002G062300 expressed protein -
15 Sobic.005G128000 stripe rust resistance protein Yr10, putative, expressed -
16 Sobic.004G076732 - K14800: pre-rRNA-processing protein TSR2
17 Sobic.002G410200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G253100 3-5 exonuclease family protein, putative, expressed -
19 Sobic.009G209800 OsFBX49 - F-box domain containing protein, expressed -
20 Sobic.003G031750 - -


Gene co-expression network
sample Sobic006G116300 Sobic006G116300 Sobic003G015000 Sobic003G015000 Sobic006G116300--Sobic003G015000 Sobic003G229400 Sobic003G229400 Sobic006G116300--Sobic003G229400 Sobic003G128600 Sobic003G128600 Sobic006G116300--Sobic003G128600 Sobic008G079100 Sobic008G079100 Sobic006G116300--Sobic008G079100 Sobic003G244800 Sobic003G244800 Sobic006G116300--Sobic003G244800 Sobic009G257300 Sobic009G257300 Sobic006G116300--Sobic009G257300 Sobic009G228201 Sobic009G228201 Sobic006G116300--Sobic009G228201 Sobic007G008800 Sobic007G008800 Sobic006G116300--Sobic007G008800 Sobic010G073600 Sobic010G073600 Sobic006G116300--Sobic010G073600 Sobic003G015000--Sobic009G228201 Sobic003G015000--Sobic009G257300 Sobic003G044900 Sobic003G044900 Sobic003G015000--Sobic003G044900 Sobic003G015000--Sobic008G079100 Sobic004G212800 Sobic004G212800 Sobic003G015000--Sobic004G212800 Sobic001G024200 Sobic001G024200 Sobic003G015000--Sobic001G024200 Sobic003G015000--Sobic003G128600 Sobic009G059600 Sobic009G059600 Sobic003G015000--Sobic009G059600 Sobic007G073400 Sobic007G073400 Sobic003G015000--Sobic007G073400 Sobic003G229400--Sobic010G073600 Sobic003G229400--Sobic003G128600 Sobic006G215100 Sobic006G215100 Sobic003G229400--Sobic006G215100 Sobic010G035801 Sobic010G035801 Sobic003G229400--Sobic010G035801 Sobic006G100000 Sobic006G100000 Sobic003G229400--Sobic006G100000 Sobic004G197900 Sobic004G197900 Sobic003G229400--Sobic004G197900 Sobic007G191100 Sobic007G191100 Sobic003G229400--Sobic007G191100 Sobic006G130200 Sobic006G130200 Sobic003G229400--Sobic006G130200 Sobic002G033600 Sobic002G033600 Sobic003G229400--Sobic002G033600 Sobic003G128600--Sobic009G059600 Sobic004G169501 Sobic004G169501 Sobic003G128600--Sobic004G169501 Sobic003G128600--Sobic003G015000 Sobic002G140800 Sobic002G140800 Sobic003G128600--Sobic002G140800 Sobic004G286900 Sobic004G286900 Sobic003G128600--Sobic004G286900 Sobic003G128600--Sobic009G257300 Sobic004G164600 Sobic004G164600 Sobic003G128600--Sobic004G164600 Sobic008G068800 Sobic008G068800 Sobic003G128600--Sobic008G068800 Sobic008G117200 Sobic008G117200 Sobic003G128600--Sobic008G117200 Sobic008G042250 Sobic008G042250 Sobic008G079100--Sobic008G042250 Sobic009G209800 Sobic009G209800 Sobic008G079100--Sobic009G209800 SobicK024000 SobicK024000 Sobic008G079100--SobicK024000 Sobic003G031750 Sobic003G031750 Sobic008G079100--Sobic003G031750 Sobic001G253100 Sobic001G253100 Sobic008G079100--Sobic001G253100 Sobic005G110430 Sobic005G110430 Sobic008G079100--Sobic005G110430 Sobic008G049701 Sobic008G049701 Sobic008G079100--Sobic008G049701 Sobic002G062300 Sobic002G062300 Sobic008G079100--Sobic002G062300 Sobic008G009500 Sobic008G009500 Sobic008G079100--Sobic008G009500 Sobic002G410200 Sobic002G410200 Sobic003G244800--Sobic002G410200 Sobic004G076732 Sobic004G076732 Sobic003G244800--Sobic004G076732 SobicK009900 SobicK009900 Sobic003G244800--SobicK009900 Sobic003G244800--Sobic001G253100 Sobic003G244800--Sobic009G209800 Sobic003G244800--Sobic008G009500 Sobic003G244800--Sobic008G042250 Sobic003G244800--Sobic004G212800 Sobic003G244800--Sobic008G049701 Sobic009G257300--Sobic003G015000 Sobic002G039600 Sobic002G039600 Sobic009G257300--Sobic002G039600 Sobic009G257300--Sobic007G073400 Sobic009G257300--Sobic009G228201 Sobic002G039500 Sobic002G039500 Sobic009G257300--Sobic002G039500 Sobic009G257300--Sobic008G079100 Sobic007G023700 Sobic007G023700 Sobic009G257300--Sobic007G023700 Sobic004G143700 Sobic004G143700 Sobic009G257300--Sobic004G143700 Sobic009G180200 Sobic009G180200 Sobic009G257300--Sobic009G180200 Sobic009G228201--Sobic003G015000 Sobic010G278500 Sobic010G278500 Sobic009G228201--Sobic010G278500 Sobic009G228201--Sobic009G257300 Sobic009G228201--Sobic008G079100 Sobic009G228201--Sobic004G212800 Sobic008G167300 Sobic008G167300 Sobic009G228201--Sobic008G167300 Sobic010G248200 Sobic010G248200 Sobic009G228201--Sobic010G248200 Sobic001G345333 Sobic001G345333 Sobic009G228201--Sobic001G345333 Sobic006G046000 Sobic006G046000 Sobic009G228201--Sobic006G046000 Sobic003G026300 Sobic003G026300 Sobic007G008800--Sobic003G026300 Sobic004G088400 Sobic004G088400 Sobic007G008800--Sobic004G088400 Sobic007G008800--SobicK009900 Sobic002G177400 Sobic002G177400 Sobic007G008800--Sobic002G177400 Sobic007G008800--Sobic004G076732 Sobic007G008800--Sobic002G410200 Sobic007G008800--Sobic001G024200 Sobic005G139800 Sobic005G139800 Sobic007G008800--Sobic005G139800 Sobic001G271801 Sobic001G271801 Sobic007G008800--Sobic001G271801 Sobic010G073600--Sobic006G215100 Sobic010G237650 Sobic010G237650 Sobic010G073600--Sobic010G237650 Sobic010G073600--Sobic003G229400 Sobic010G073600--Sobic006G130200 Sobic004G218300 Sobic004G218300 Sobic010G073600--Sobic004G218300 Sobic005G128000 Sobic005G128000 Sobic010G073600--Sobic005G128000 Sobic003G289100 Sobic003G289100 Sobic010G073600--Sobic003G289100 Sobic006G144000 Sobic006G144000 Sobic010G073600--Sobic006G144000 Sobic003G402900 Sobic003G402900 Sobic010G073600--Sobic003G402900
Octagon: transcription factors


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