Gene annotation
Transcriptome id Sobic.010G199800.1
Synonym Sb10g024840, PUX4
Functional annotation UBA and UBX domain-containing protein, putative, expressed
UniProt C5Z6A7
Pfam PF14555 PF00789 PF08059
Panther DB PTHR23333 PTHR23333:SF25
NCBI CDD KOG2086; Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion
KEGG Orthology K14012; SHP1, UBX1, UBX domain-containing protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G04210 : plant UBX domain containing protein 4
RAP-DB (Rice) LOC_Os06g42810.1 : UBA and UBX domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051448
Brachypodium KQK17581
Barley -
Wheat TraesCS7A02G390200 , TraesCS7D02G385900
Populus -


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cDNA sequences
Sobic.010G199800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
2 Sobic.003G336800 expressed protein -
3 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
4 Sobic.006G130200 expressed protein -
5 Sobic.001G425000 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
6 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
7 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
8 Sobic.006G128800 expressed protein -
9 Sobic.001G202266 - -
10 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
11 Sobic.004G007300 expressed protein -
12 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
13 Sobic.004G015800 zinc carboxypeptidase family protein, putative, expressed -
14 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
15 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.007G088900 expressed protein -
17 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
18 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
19 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
20 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit


Gene co-expression network
sample Sobic010G199800 Sobic010G199800 Sobic002G061400 Sobic002G061400 Sobic010G199800--Sobic002G061400 Sobic003G336800 Sobic003G336800 Sobic010G199800--Sobic003G336800 Sobic010G174800 Sobic010G174800 Sobic010G199800--Sobic010G174800 Sobic006G130200 Sobic006G130200 Sobic010G199800--Sobic006G130200 Sobic001G425000 Sobic001G425000 Sobic010G199800--Sobic001G425000 Sobic002G197100 Sobic002G197100 Sobic010G199800--Sobic002G197100 Sobic004G349900 Sobic004G349900 Sobic010G199800--Sobic004G349900 Sobic006G128800 Sobic006G128800 Sobic010G199800--Sobic006G128800 Sobic001G202266 Sobic001G202266 Sobic010G199800--Sobic001G202266 Sobic008G129700 Sobic008G129700 Sobic002G061400--Sobic008G129700 Sobic002G061400--Sobic003G336800 Sobic002G421700 Sobic002G421700 Sobic002G061400--Sobic002G421700 Sobic002G061400--Sobic010G199800 Sobic008G034600 Sobic008G034600 Sobic002G061400--Sobic008G034600 Sobic008G116500 Sobic008G116500 Sobic002G061400--Sobic008G116500 Sobic002G297800 Sobic002G297800 Sobic002G061400--Sobic002G297800 Sobic002G049000 Sobic002G049000 Sobic002G061400--Sobic002G049000 Sobic008G117200 Sobic008G117200 Sobic002G061400--Sobic008G117200 Sobic004G088400 Sobic004G088400 Sobic003G336800--Sobic004G088400 Sobic003G336800--Sobic008G129700 Sobic003G336800--Sobic002G061400 Sobic003G336800--Sobic010G174800 Sobic001G296500 Sobic001G296500 Sobic003G336800--Sobic001G296500 Sobic010G202600 Sobic010G202600 Sobic003G336800--Sobic010G202600 Sobic003G336800--Sobic010G199800 Sobic003G336800--Sobic006G128800 Sobic007G008800 Sobic007G008800 Sobic003G336800--Sobic007G008800 Sobic003G248500 Sobic003G248500 Sobic010G174800--Sobic003G248500 Sobic010G174800--Sobic006G128800 Sobic003G185200 Sobic003G185200 Sobic010G174800--Sobic003G185200 Sobic003G359300 Sobic003G359300 Sobic010G174800--Sobic003G359300 Sobic010G174800--Sobic006G130200 Sobic010G174800--Sobic003G336800 Sobic004G263900 Sobic004G263900 Sobic010G174800--Sobic004G263900 Sobic001G390500 Sobic001G390500 Sobic010G174800--Sobic001G390500 Sobic001G028400 Sobic001G028400 Sobic010G174800--Sobic001G028400 Sobic006G130200--Sobic006G128800 Sobic004G218300 Sobic004G218300 Sobic006G130200--Sobic004G218300 Sobic006G130200--Sobic010G174800 Sobic009G032300 Sobic009G032300 Sobic006G130200--Sobic009G032300 Sobic003G398400 Sobic003G398400 Sobic006G130200--Sobic003G398400 Sobic006G130200--Sobic001G425000 Sobic006G092800 Sobic006G092800 Sobic006G130200--Sobic006G092800 Sobic006G130200--Sobic003G336800 Sobic001G235000 Sobic001G235000 Sobic006G130200--Sobic001G235000 Sobic001G425000--Sobic002G197100 Sobic001G176200 Sobic001G176200 Sobic001G425000--Sobic001G176200 Sobic006G046700 Sobic006G046700 Sobic001G425000--Sobic006G046700 Sobic003G445400 Sobic003G445400 Sobic001G425000--Sobic003G445400 Sobic005G015900 Sobic005G015900 Sobic001G425000--Sobic005G015900 Sobic008G152900 Sobic008G152900 Sobic001G425000--Sobic008G152900 Sobic001G425000--Sobic001G202266 Sobic006G186400 Sobic006G186400 Sobic001G425000--Sobic006G186400 Sobic004G180900 Sobic004G180900 Sobic001G425000--Sobic004G180900 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic006G173100 Sobic006G173100 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic002G197100--Sobic001G425000 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic007G137900 Sobic007G137900 Sobic004G349900--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G349900--Sobic002G157300 Sobic004G349900--Sobic006G128800 Sobic001G206100 Sobic001G206100 Sobic004G349900--Sobic001G206100 Sobic003G220200 Sobic003G220200 Sobic004G349900--Sobic003G220200 Sobic007G011400 Sobic007G011400 Sobic004G349900--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic004G349900--Sobic003G261300 Sobic004G349900--Sobic008G116500 Sobic007G185900 Sobic007G185900 Sobic004G349900--Sobic007G185900 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic006G128800--Sobic010G174800 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G128800--Sobic006G130200 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500 Sobic008G073000 Sobic008G073000 Sobic001G202266--Sobic008G073000 Sobic001G202266--Sobic001G425000 Sobic002G001600 Sobic002G001600 Sobic001G202266--Sobic002G001600 Sobic004G116600 Sobic004G116600 Sobic001G202266--Sobic004G116600 Sobic005G030300 Sobic005G030300 Sobic001G202266--Sobic005G030300 Sobic006G278200 Sobic006G278200 Sobic001G202266--Sobic006G278200 Sobic003G073000 Sobic003G073000 Sobic001G202266--Sobic003G073000 Sobic001G202266--Sobic006G130200 Sobic001G202266--Sobic002G061400
Octagon: transcription factors


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