Gene annotation
| Transcriptome id | Sobic.006G281600.1,Sobic.006G281600.2,Sobic.006G281600.4 |
|---|---|
| Synonym | Sb06g034180, TPP |
| Functional annotation | OsSigP6 - Putative Type I Signal Peptidase homologue employs a putative Ser/Lys catalytic dyad, expressed |
| UniProt | A0A1B6PPC7 , A0A1B6PPE6 , A0A1Z5RG28 |
| Pfam | PF10502 PF00717 |
| Panther DB | PTHR12383 PTHR12383:SF18 |
| NCBI CDD | - |
| KEGG Orthology | K03100; signal peptidase I |
| Gene Ontology | GO:0016020; membrane GO:0008236serine-type peptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT2G30440 : thylakoid processing peptide |
|---|---|
| RAP-DB (Rice) | LOC_Os09g28000.1 : OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed |
| MaizeGDB (Corn) | Zm00025a057507 |
| Brachypodium | KQJ85524 |
| Barley | HORVU7Hr1G109250.16 , HORVU7Hr1G109250.17 , HORVU7Hr1G109250.14 , HORVU7Hr1G109250.15 , HORVU7Hr1G109250.10 , HORVU7Hr1G109250.11 , HORVU7Hr1G109250.29 , HORVU7Hr1G109250.4 , HORVU7Hr1G109250.6 , HORVU7Hr1G109250.7 , HORVU7Hr1G109250.1 , HORVU7Hr1G109250.2 , HORVU7Hr1G109250.3 , HORVU7Hr1G109250.8 , HORVU7Hr1G109250.9 , HORVU7Hr1G109250.26 , HORVU7Hr1G109250.25 , HORVU7Hr1G109250.24 , HORVU7Hr1G109250.23 , HORVU7Hr1G109250.22 , HORVU7Hr1G109250.20 |
| Wheat | TraesCS2B02G617500 , TraesCS2B02G617500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G073700 | OsMADS65 - MADS-box family gene with MIKC , type-box, expressed | - |
| 2 | Sobic.010G187201 | - | - |
| 3 | Sobic.003G044900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 4 | Sobic.001G024200 | lipase class 3 family protein, putative, expressed | - |
| 5 | Sobic.002G221700 | microtubule associated protein, putative, expressed | K16732: protein regulator of cytokinesis 1 |
| 6 | Sobic.006G116300 | OsFBDUF22 - F-box and DUF domain containing protein, expressed | - |
| 7 | Sobic.003G117000 | late embryogenesis abundant protein, putative, expressed | - |
| 8 | Sobic.006G133600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.K009900 | autophagy-related protein 8D, putative, expressed | K08341: GABARAP, ATG8, GABA(A) receptor-associated protein |
| 10 | Sobic.003G244800 | - | - |
| 11 | Sobic.003G036950 | - | - |
| 12 | Sobic.002G221900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 13 | Sobic.002G335700 | OsFBX252 - F-box domain containing protein, expressed | - |
| 14 | Sobic.004G164600 | - | - |
| 15 | Sobic.003G015000 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 16 | Sobic.005G110430 | - | - |
| 17 | Sobic.004G240900 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed | K13947: auxin efflux carrier family protein |
| 18 | Sobic.006G068400 | expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@B-block binding subunit of TFIIIC("PubMedID : 26759170,PubMedID : 24597475")@seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@transcription factor-related, putative, expressed | K15199: general transcription factor 3C polypeptide 1 |
| 19 | Sobic.008G042250 | - | - |
| 20 | Sobic.008G157950 | - | - |
Gene co-expression network
Octagon: transcription factors
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