Gene annotation
Transcriptome id Sobic.003G117000.1
Synonym ATDI21, Sb03g009860, DI21
Functional annotation late embryogenesis abundant protein, putative, expressed
UniProt C5XFV1
Pfam PF03242
Panther DB PTHR33509 PTHR33509:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress


Orthologs (automatic annotation)
TAIR AT3G53770 : late embryogenesis abundant 3 (LEA3) family protein
RAP-DB (Rice) LOC_Os01g21250.1 : late embryogenesis abundant protein, putative, expressed
MaizeGDB (Corn) Zm00025a023956
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G117000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.002G284200 peroxisomal multifunctional enzyme type 2, putative, expressed -
3 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -
4 Sobic.005G117901 - -
5 Sobic.010G218500 bZIP transcription factor domain containing protein, expressed -
6 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
7 Sobic.001G243901 - -
8 Sobic.003G121400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
9 Sobic.003G036950 - -
10 Sobic.002G115801 - -
11 Sobic.005G130450 - -
12 Sobic.008G101350 - -
13 Sobic.004G279300 photoperiodic flowering time gene(PubMedID : 22394582)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
14 Sobic.001G439500 acyl CoA binding protein, putative, expressed -
15 Sobic.010G218100 expressed protein -
16 Sobic.K016900 arginyl-tRNA--protein transferase 1, putative, expressed -
17 Sobic.001G515600 expressed protein -
18 Sobic.001G222300 cyclin-dependent kinase inhibitor, putative, expressed -
19 Sobic.004G096200 - -
20 Sobic.010G248200 KID-containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G117000 Sobic003G117000 Sobic007G211000 Sobic007G211000 Sobic003G117000--Sobic007G211000 Sobic002G284200 Sobic002G284200 Sobic003G117000--Sobic002G284200 Sobic007G150200 Sobic007G150200 Sobic003G117000--Sobic007G150200 Sobic005G117901 Sobic005G117901 Sobic003G117000--Sobic005G117901 Sobic010G218500 Sobic010G218500 Sobic003G117000--Sobic010G218500 Sobic001G024200 Sobic001G024200 Sobic003G117000--Sobic001G024200 Sobic001G243901 Sobic001G243901 Sobic003G117000--Sobic001G243901 Sobic003G121400 Sobic003G121400 Sobic003G117000--Sobic003G121400 Sobic003G036950 Sobic003G036950 Sobic003G117000--Sobic003G036950 Sobic007G211000--Sobic001G024200 Sobic004G112500 Sobic004G112500 Sobic007G211000--Sobic004G112500 Sobic010G124001 Sobic010G124001 Sobic007G211000--Sobic010G124001 Sobic007G211000--Sobic003G117000 Sobic001G272000 Sobic001G272000 Sobic007G211000--Sobic001G272000 Sobic007G211000--Sobic001G243901 Sobic007G211000--Sobic005G117901 Sobic004G212800 Sobic004G212800 Sobic007G211000--Sobic004G212800 Sobic010G248200 Sobic010G248200 Sobic007G211000--Sobic010G248200 Sobic002G284200--Sobic003G117000 Sobic002G284200--Sobic007G150200 Sobic001G451000 Sobic001G451000 Sobic002G284200--Sobic001G451000 Sobic002G284200--Sobic007G211000 Sobic003G093600 Sobic003G093600 Sobic002G284200--Sobic003G093600 Sobic007G078000 Sobic007G078000 Sobic002G284200--Sobic007G078000 Sobic001G439500 Sobic001G439500 Sobic002G284200--Sobic001G439500 Sobic002G165300 Sobic002G165300 Sobic002G284200--Sobic002G165300 Sobic002G283300 Sobic002G283300 Sobic002G284200--Sobic002G283300 Sobic007G150200--Sobic002G284200 Sobic007G150200--Sobic003G117000 Sobic007G023700 Sobic007G023700 Sobic007G150200--Sobic007G023700 Sobic007G150200--Sobic003G093600 Sobic004G188300 Sobic004G188300 Sobic007G150200--Sobic004G188300 Sobic001G225100 Sobic001G225100 Sobic007G150200--Sobic001G225100 Sobic005G167300 Sobic005G167300 Sobic007G150200--Sobic005G167300 Sobic007G150200--Sobic010G218500 Sobic010G218100 Sobic010G218100 Sobic007G150200--Sobic010G218100 Sobic005G117901--Sobic001G243901 Sobic008G101350 Sobic008G101350 Sobic005G117901--Sobic008G101350 Sobic004G096200 Sobic004G096200 Sobic005G117901--Sobic004G096200 Sobic005G130450 Sobic005G130450 Sobic005G117901--Sobic005G130450 Sobic004G279300 Sobic004G279300 Sobic005G117901--Sobic004G279300 Sobic001G515600 Sobic001G515600 Sobic005G117901--Sobic001G515600 Sobic005G117901--Sobic007G211000 Sobic002G048300 Sobic002G048300 Sobic005G117901--Sobic002G048300 Sobic010G218500--Sobic010G248200 Sobic010G218500--Sobic001G243901 Sobic010G218500--Sobic005G117901 Sobic002G253500 Sobic002G253500 Sobic010G218500--Sobic002G253500 Sobic010G218500--Sobic008G101350 Sobic010G218500--Sobic004G096200 Sobic010G218500--Sobic007G211000 Sobic002G108800 Sobic002G108800 Sobic010G218500--Sobic002G108800 Sobic001G345333 Sobic001G345333 Sobic010G218500--Sobic001G345333 Sobic001G024200--Sobic004G212800 Sobic001G024200--Sobic007G211000 Sobic001G024200--Sobic004G112500 Sobic003G204000 Sobic003G204000 Sobic001G024200--Sobic003G204000 Sobic001G024200--Sobic001G272000 Sobic004G164600 Sobic004G164600 Sobic001G024200--Sobic004G164600 SobicK009900 SobicK009900 Sobic001G024200--SobicK009900 Sobic001G024200--Sobic001G439500 Sobic001G024200--Sobic010G248200 Sobic001G243901--Sobic005G117901 Sobic001G243901--Sobic008G101350 Sobic001G243901--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic001G243901--Sobic002G007250 Sobic001G243901--Sobic010G248200 Sobic001G243901--Sobic004G096200 Sobic001G243901--Sobic010G218500 Sobic003G302701 Sobic003G302701 Sobic001G243901--Sobic003G302701 Sobic001G243901--Sobic007G211000 Sobic003G121400--Sobic001G515600 Sobic003G121400--Sobic004G279300 Sobic003G121400--Sobic005G117901 Sobic003G121400--Sobic003G117000 Sobic003G121400--Sobic005G130450 Sobic003G121400--Sobic007G211000 Sobic003G121400--Sobic001G024200 Sobic001G222300 Sobic001G222300 Sobic003G121400--Sobic001G222300 Sobic004G208400 Sobic004G208400 Sobic003G121400--Sobic004G208400 Sobic008G157950 Sobic008G157950 Sobic003G036950--Sobic008G157950 Sobic003G036950--Sobic004G164600 Sobic005G110430 Sobic005G110430 Sobic003G036950--Sobic005G110430 Sobic008G042250 Sobic008G042250 Sobic003G036950--Sobic008G042250 Sobic002G221700 Sobic002G221700 Sobic003G036950--Sobic002G221700 Sobic003G036950--Sobic001G345333 Sobic003G036950--Sobic004G212800 Sobic003G036950--Sobic002G007250 Sobic003G036950--Sobic004G112500
Octagon: transcription factors


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