Gene annotation
Transcriptome id Sobic.004G279300.1
Synonym CIR1, LATE ELONGATED HYPOCOTYL , Sb04g031590, LHY ;LATE ELONGATED HYPOCOTYL , RVE2, LHY
Functional annotation photoperiodic flowering time gene (PubMedID : 22394582)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MYB family transcription factor, putative, expressed
UniProt C5Y0W4
Pfam PF00249
Panther DB PTHR12802 PTHR12802:SF37
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37260 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os02g46030.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a032344 , Zm00025a021563 , Zm00025a035798
Brachypodium KQK00809
Barley -
Wheat TraesCS6D02G241900 , TraesCS6B02G288500 , TraesCS6A02G261100 , TraesCS6A02G261100 , TraesCS7D02G540700 , TraesCS7D02G540700 , TraesCS7A02G553800 , TraesCS7A02G553800 , TraesCS7A02G553800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G515600 expressed protein -
2 Sobic.003G121400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
3 Sobic.005G117901 - -
4 Sobic.005G130450 - -
5 Sobic.004G096200 - -
6 Sobic.003G117000 late embryogenesis abundant protein, putative, expressed -
7 Sobic.001G243901 - -
8 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.004G208400 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
10 Sobic.008G101350 - -
11 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
12 Sobic.010G218500 bZIP transcription factor domain containing protein, expressed -
13 Sobic.002G048300 expressed protein -
14 Sobic.002G048300 expressed protein -
15 Sobic.002G048300 expressed protein -
16 Sobic.002G048300 expressed protein -
17 Sobic.002G048300 expressed protein -
18 Sobic.002G048300 expressed protein -
19 Sobic.002G048300 expressed protein -
20 Sobic.004G112500 - -


Gene co-expression network
sample Sobic004G279300 Sobic004G279300 Sobic001G515600 Sobic001G515600 Sobic004G279300--Sobic001G515600 Sobic003G121400 Sobic003G121400 Sobic004G279300--Sobic003G121400 Sobic005G117901 Sobic005G117901 Sobic004G279300--Sobic005G117901 Sobic005G130450 Sobic005G130450 Sobic004G279300--Sobic005G130450 Sobic004G096200 Sobic004G096200 Sobic004G279300--Sobic004G096200 Sobic003G117000 Sobic003G117000 Sobic004G279300--Sobic003G117000 Sobic001G243901 Sobic001G243901 Sobic004G279300--Sobic001G243901 Sobic007G211000 Sobic007G211000 Sobic004G279300--Sobic007G211000 Sobic004G208400 Sobic004G208400 Sobic004G279300--Sobic004G208400 Sobic001G515600--Sobic003G121400 Sobic001G515600--Sobic004G279300 Sobic001G515600--Sobic005G117901 Sobic001G515600--Sobic005G130450 Sobic001G515600--Sobic007G211000 Sobic001G515600--Sobic004G096200 Sobic001G024200 Sobic001G024200 Sobic001G515600--Sobic001G024200 Sobic001G515600--Sobic001G243901 Sobic001G515600--Sobic003G117000 Sobic003G121400--Sobic001G515600 Sobic003G121400--Sobic004G279300 Sobic003G121400--Sobic005G117901 Sobic003G121400--Sobic003G117000 Sobic003G121400--Sobic005G130450 Sobic003G121400--Sobic007G211000 Sobic003G121400--Sobic001G024200 Sobic001G222300 Sobic001G222300 Sobic003G121400--Sobic001G222300 Sobic003G121400--Sobic004G208400 Sobic005G117901--Sobic001G243901 Sobic008G101350 Sobic008G101350 Sobic005G117901--Sobic008G101350 Sobic005G117901--Sobic004G096200 Sobic005G117901--Sobic005G130450 Sobic005G117901--Sobic004G279300 Sobic005G117901--Sobic001G515600 Sobic005G117901--Sobic007G211000 Sobic002G048300 Sobic002G048300 Sobic005G117901--Sobic002G048300 Sobic005G130450--Sobic005G117901 Sobic005G130450--Sobic004G096200 Sobic005G130450--Sobic001G515600 Sobic005G130450--Sobic008G101350 Sobic005G130450--Sobic004G279300 Sobic005G130450--Sobic001G243901 Sobic005G130450--Sobic007G211000 Sobic005G130450--Sobic003G121400 Sobic004G112500 Sobic004G112500 Sobic005G130450--Sobic004G112500 Sobic004G096200--Sobic005G117901 Sobic004G096200--Sobic008G101350 Sobic004G096200--Sobic001G243901 Sobic004G096200--Sobic005G130450 Sobic004G096200--Sobic007G211000 Sobic010G218500 Sobic010G218500 Sobic004G096200--Sobic010G218500 Sobic004G096200--Sobic002G048300 Sobic003G117000--Sobic007G211000 Sobic002G284200 Sobic002G284200 Sobic003G117000--Sobic002G284200 Sobic007G150200 Sobic007G150200 Sobic003G117000--Sobic007G150200 Sobic003G117000--Sobic005G117901 Sobic003G117000--Sobic010G218500 Sobic003G117000--Sobic001G024200 Sobic003G117000--Sobic001G243901 Sobic003G117000--Sobic003G121400 Sobic003G036950 Sobic003G036950 Sobic003G117000--Sobic003G036950 Sobic001G243901--Sobic005G117901 Sobic001G243901--Sobic008G101350 Sobic001G345333 Sobic001G345333 Sobic001G243901--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic001G243901--Sobic002G007250 Sobic010G248200 Sobic010G248200 Sobic001G243901--Sobic010G248200 Sobic001G243901--Sobic004G096200 Sobic001G243901--Sobic010G218500 Sobic003G302701 Sobic003G302701 Sobic001G243901--Sobic003G302701 Sobic001G243901--Sobic007G211000 Sobic007G211000--Sobic001G024200 Sobic007G211000--Sobic004G112500 Sobic010G124001 Sobic010G124001 Sobic007G211000--Sobic010G124001 Sobic007G211000--Sobic003G117000 Sobic001G272000 Sobic001G272000 Sobic007G211000--Sobic001G272000 Sobic007G211000--Sobic001G243901 Sobic007G211000--Sobic005G117901 Sobic004G212800 Sobic004G212800 Sobic007G211000--Sobic004G212800 Sobic007G211000--Sobic010G248200 Sobic006G173000 Sobic006G173000 Sobic004G208400--Sobic006G173000 Sobic002G291700 Sobic002G291700 Sobic004G208400--Sobic002G291700 Sobic004G208400--Sobic004G279300 Sobic004G208400--Sobic007G211000 Sobic006G137400 Sobic006G137400 Sobic004G208400--Sobic006G137400 Sobic004G208400--Sobic003G121400 Sobic004G208400--Sobic004G096200 Sobic007G037100 Sobic007G037100 Sobic004G208400--Sobic007G037100 Sobic004G208400--Sobic001G515600
Octagon: transcription factors


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