Gene annotation
Transcriptome id Sobic.006G068400.1
Synonym Sb06g015520
Functional annotation expressed high in CK60 (an inefficient nitrogen user) (PubMedID : 28697783)
B-block binding subunit of TFIIIC( (PubMedID : 26759170,(PubMedID : 24597475)
seed storage 2S albumin superfamily( (PubMedID : 26759170,(PubMedID : 24597475)
transcription factor-related, putative, expressed
UniProt A0A1B6PKM7
Pfam -
Panther DB PTHR15180 PTHR15180:SF1
NCBI CDD -
KEGG Orthology K15199; general transcription factor 3C polypeptide 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17450 : B-block binding subunit of TFIIIC
RAP-DB (Rice) LOC_Os02g42200.1 : transcription factor-related, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK00450 , KQK00445 , KQK00447 , KQK00446 , KQK00449 , KQK00448
Barley HORVU1Hr1G093000.9 , HORVU1Hr1G093000.8 , HORVU1Hr1G093000.3 , HORVU1Hr1G093000.2 , HORVU1Hr1G093000.1 , HORVU1Hr1G093000.7 , HORVU1Hr1G093000.6 , HORVU1Hr1G093000.5 , HORVU1Hr1G093000.4 , HORVU1Hr1G093000.19 , HORVU1Hr1G093000.18 , HORVU1Hr1G093000.13 , HORVU1Hr1G093000.12 , HORVU1Hr1G093000.11 , HORVU1Hr1G093000.10 , HORVU1Hr1G093000.17 , HORVU1Hr1G093000.16 , HORVU1Hr1G093000.15 , HORVU1Hr1G093000.14 , HORVU6Hr1G059300.9 , HORVU6Hr1G059300.8 , HORVU6Hr1G059300.3 , HORVU6Hr1G059300.2 , HORVU6Hr1G059300.5 , HORVU6Hr1G059300.4 , HORVU6Hr1G059300.7 , HORVU6Hr1G059300.6 , HORVU1Hr1G093000.39 , HORVU1Hr1G093000.38 , HORVU1Hr1G093000.35 , HORVU1Hr1G093000.34 , HORVU1Hr1G093000.37 , HORVU1Hr1G093000.36 , HORVU1Hr1G093000.31 , HORVU1Hr1G093000.30 , HORVU1Hr1G093000.33 , HORVU1Hr1G093000.32 , HORVU1Hr1G093000.22 , HORVU1Hr1G093000.23 , HORVU1Hr1G093000.20 , HORVU1Hr1G093000.21 , HORVU1Hr1G093000.26 , HORVU1Hr1G093000.27 , HORVU1Hr1G093000.24 , HORVU1Hr1G093000.25 , HORVU1Hr1G093000.28 , HORVU1Hr1G093000.29 , HORVU1Hr1G093000.52 , HORVU1Hr1G093000.51 , HORVU1Hr1G093000.50 , HORVU6Hr1G059300.20 , HORVU6Hr1G059300.21 , HORVU6Hr1G059300.22 , HORVU6Hr1G059300.24 , HORVU6Hr1G059300.25 , HORVU6Hr1G059300.26 , HORVU1Hr1G093000.44 , HORVU1Hr1G093000.45 , HORVU1Hr1G093000.46 , HORVU1Hr1G093000.47 , HORVU1Hr1G093000.40 , HORVU1Hr1G093000.41 , HORVU1Hr1G093000.42 , HORVU1Hr1G093000.43 , HORVU1Hr1G093000.48 , HORVU1Hr1G093000.49 , HORVU6Hr1G059300.18 , HORVU6Hr1G059300.15 , HORVU6Hr1G059300.14 , HORVU6Hr1G059300.17 , HORVU6Hr1G059300.16 , HORVU6Hr1G059300.11 , HORVU6Hr1G059300.10 , HORVU6Hr1G059300.13 , HORVU6Hr1G059300.12
Wheat TraesCS6A02G233300 , TraesCS6A02G221300 , TraesCS6A02G221300 , TraesCS6D02G213900 , TraesCS6D02G213900 , TraesCS1B02G460500 , TraesCS1B02G460500 , TraesCS6D02G213900 , TraesCS1A02G426200 , TraesCS1D02G435700 , TraesCS6B02G259900 , TraesCS6B02G259900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G056100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Leucine Rich Repeat family protein, expressed -
2 Sobic.005G139800 Brix domain containing protein, putative, expressed -
3 Sobic.009G209800 OsFBX49 - F-box domain containing protein, expressed -
4 Sobic.010G139301 - -
5 Sobic.008G049701 - -
6 Sobic.001G305400 metallothionein family protein, expressed -
7 Sobic.001G240400 ENT domain containing protein, expressed -
8 Sobic.005G221425 - -
9 Sobic.008G079100 - -
10 Sobic.005G117801 - -
11 Sobic.004G121000 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
12 Sobic.001G271801 - -
13 Sobic.005G099150 - -
14 Sobic.007G142050 - -
15 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
16 Sobic.001G253100 3-5 exonuclease family protein, putative, expressed -
17 Sobic.008G042250 - -
18 Sobic.004G045566 - -
19 Sobic.001G287301 - -
20 Sobic.002G221200 zinc knuckle domain containing protein, expressed -


Gene co-expression network
sample Sobic006G068400 Sobic006G068400 Sobic002G056100 Sobic002G056100 Sobic006G068400--Sobic002G056100 Sobic005G139800 Sobic005G139800 Sobic006G068400--Sobic005G139800 Sobic009G209800 Sobic009G209800 Sobic006G068400--Sobic009G209800 Sobic010G139301 Sobic010G139301 Sobic006G068400--Sobic010G139301 Sobic008G049701 Sobic008G049701 Sobic006G068400--Sobic008G049701 Sobic001G305400 Sobic001G305400 Sobic006G068400--Sobic001G305400 Sobic001G240400 Sobic001G240400 Sobic006G068400--Sobic001G240400 Sobic005G221425 Sobic005G221425 Sobic006G068400--Sobic005G221425 Sobic008G079100 Sobic008G079100 Sobic006G068400--Sobic008G079100 Sobic002G056100--Sobic009G209800 Sobic002G056100--Sobic001G240400 Sobic002G056100--Sobic008G049701 Sobic001G253100 Sobic001G253100 Sobic002G056100--Sobic001G253100 Sobic005G117801 Sobic005G117801 Sobic002G056100--Sobic005G117801 Sobic002G056100--Sobic001G305400 Sobic008G042250 Sobic008G042250 Sobic002G056100--Sobic008G042250 Sobic002G056100--Sobic005G221425 Sobic002G221200 Sobic002G221200 Sobic002G056100--Sobic002G221200 Sobic005G139800--Sobic008G049701 Sobic005G139800--Sobic009G209800 Sobic001G287301 Sobic001G287301 Sobic005G139800--Sobic001G287301 Sobic005G139800--Sobic008G042250 Sobic005G139800--Sobic001G240400 Sobic005G139800--Sobic005G117801 Sobic005G139800--Sobic002G056100 Sobic002G410200 Sobic002G410200 Sobic005G139800--Sobic002G410200 Sobic005G139800--Sobic005G221425 Sobic009G209800--Sobic008G049701 Sobic009G209800--Sobic001G253100 Sobic009G209800--Sobic005G139800 Sobic009G209800--Sobic001G240400 Sobic009G209800--Sobic008G042250 Sobic009G209800--Sobic005G117801 Sobic009G209800--Sobic002G056100 Sobic009G209800--Sobic005G221425 Sobic009G209800--Sobic002G410200 Sobic007G089600 Sobic007G089600 Sobic010G139301--Sobic007G089600 Sobic010G139301--Sobic006G068400 Sobic007G142050 Sobic007G142050 Sobic010G139301--Sobic007G142050 Sobic004G169501 Sobic004G169501 Sobic010G139301--Sobic004G169501 Sobic003G323900 Sobic003G323900 Sobic010G139301--Sobic003G323900 Sobic002G073300 Sobic002G073300 Sobic010G139301--Sobic002G073300 Sobic002G182300 Sobic002G182300 Sobic010G139301--Sobic002G182300 Sobic005G099150 Sobic005G099150 Sobic010G139301--Sobic005G099150 Sobic008G068800 Sobic008G068800 Sobic010G139301--Sobic008G068800 Sobic008G049701--Sobic001G287301 Sobic008G049701--Sobic008G042250 Sobic008G049701--Sobic009G209800 Sobic005G110430 Sobic005G110430 Sobic008G049701--Sobic005G110430 Sobic008G049701--Sobic005G139800 Sobic008G049701--Sobic001G253100 Sobic008G049701--Sobic005G117801 SobicK009900 SobicK009900 Sobic008G049701--SobicK009900 Sobic008G049701--Sobic001G240400 Sobic001G305400--Sobic002G221200 Sobic008G091900 Sobic008G091900 Sobic001G305400--Sobic008G091900 Sobic001G305400--Sobic001G240400 Sobic001G305400--Sobic005G117801 Sobic001G305400--Sobic002G056100 Sobic001G305400--Sobic009G209800 Sobic005G142200 Sobic005G142200 Sobic001G305400--Sobic005G142200 Sobic002G060500 Sobic002G060500 Sobic001G305400--Sobic002G060500 Sobic001G261480 Sobic001G261480 Sobic001G305400--Sobic001G261480 Sobic001G240400--Sobic009G209800 Sobic001G240400--Sobic002G221200 Sobic001G240400--Sobic001G253100 Sobic001G240400--Sobic005G117801 Sobic001G240400--Sobic002G056100 Sobic001G240400--Sobic008G091900 Sobic001G240400--Sobic008G049701 Sobic001G240400--Sobic001G305400 Sobic001G240400--Sobic005G221425 Sobic005G221425--Sobic009G209800 Sobic005G221425--Sobic001G240400 Sobic005G221425--Sobic001G253100 Sobic008G009500 Sobic008G009500 Sobic005G221425--Sobic008G009500 Sobic005G221425--Sobic008G049701 Sobic005G221425--Sobic002G056100 SobicK024000 SobicK024000 Sobic005G221425--SobicK024000 Sobic005G221425--Sobic005G139800 Sobic004G076732 Sobic004G076732 Sobic005G221425--Sobic004G076732 Sobic008G079100--Sobic008G042250 Sobic008G079100--Sobic009G209800 Sobic008G079100--SobicK024000 Sobic003G031750 Sobic003G031750 Sobic008G079100--Sobic003G031750 Sobic008G079100--Sobic001G253100 Sobic008G079100--Sobic005G110430 Sobic008G079100--Sobic008G049701 Sobic002G062300 Sobic002G062300 Sobic008G079100--Sobic002G062300 Sobic008G079100--Sobic008G009500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.