Gene annotation
Transcriptome id Sobic.007G088500.1
Synonym Sb07g007710
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6PGI4
Pfam -
Panther DB PTHR12606:SF13 PTHR12606
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25010 : Aminotransferase-like, plant mobile domain family protein
RAP-DB (Rice) LOC_Os02g31860.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G116200 PPR repeat domain containing protein, putative, expressed -
2 Sobic.002G128750 - -
3 Sobic.001G248600 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed K04120: ent-copalyl diphosphate synthase
4 Sobic.004G193200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
5 Sobic.006G062200 DNA cross-link repair 1A protein, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
6 Sobic.009G063450 - -
7 Sobic.001G535300 - -
8 Sobic.003G073700 OsMADS65 - MADS-box family gene with MIKC , type-box, expressed -
9 Sobic.010G115300 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
10 Sobic.002G192700 hydrolase, alpha/beta fold family domain containing protein, expressed -
11 Sobic.008G097000 oxidoreductase, aldo/keto reductase family protein, putative, expressed K17744: L-galactose dehydrogenase
12 Sobic.006G045200 - -
13 Sobic.004G159600 - -
14 Sobic.002G335700 OsFBX252 - F-box domain containing protein, expressed -
15 Sobic.004G290400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.008G130601 - -
17 Sobic.002G252600 pob, putative, expressed -
18 Sobic.002G085700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
19 Sobic.001G327400 - -
20 Sobic.001G541700 flavin-containing monooxygenase family protein, putative, expressed -


Gene co-expression network
sample Sobic007G088500 Sobic007G088500 Sobic001G116200 Sobic001G116200 Sobic007G088500--Sobic001G116200 Sobic002G128750 Sobic002G128750 Sobic007G088500--Sobic002G128750 Sobic001G248600 Sobic001G248600 Sobic007G088500--Sobic001G248600 Sobic004G193200 Sobic004G193200 Sobic007G088500--Sobic004G193200 Sobic006G062200 Sobic006G062200 Sobic007G088500--Sobic006G062200 Sobic009G063450 Sobic009G063450 Sobic007G088500--Sobic009G063450 Sobic001G535300 Sobic001G535300 Sobic007G088500--Sobic001G535300 Sobic003G073700 Sobic003G073700 Sobic007G088500--Sobic003G073700 Sobic010G115300 Sobic010G115300 Sobic007G088500--Sobic010G115300 Sobic001G116200--Sobic004G193200 Sobic001G116200--Sobic007G088500 Sobic001G116200--Sobic002G128750 Sobic001G116200--Sobic003G073700 Sobic001G116200--Sobic001G248600 Sobic001G116200--Sobic001G535300 Sobic006G045200 Sobic006G045200 Sobic001G116200--Sobic006G045200 Sobic002G335700 Sobic002G335700 Sobic001G116200--Sobic002G335700 Sobic004G358500 Sobic004G358500 Sobic001G116200--Sobic004G358500 Sobic001G177500 Sobic001G177500 Sobic002G128750--Sobic001G177500 Sobic001G370100 Sobic001G370100 Sobic002G128750--Sobic001G370100 Sobic002G227800 Sobic002G227800 Sobic002G128750--Sobic002G227800 Sobic002G013500 Sobic002G013500 Sobic002G128750--Sobic002G013500 Sobic002G085700 Sobic002G085700 Sobic002G128750--Sobic002G085700 Sobic007G100900 Sobic007G100900 Sobic002G128750--Sobic007G100900 Sobic002G289701 Sobic002G289701 Sobic002G128750--Sobic002G289701 Sobic006G088500 Sobic006G088500 Sobic002G128750--Sobic006G088500 Sobic002G128750--Sobic001G535300 Sobic001G248600--Sobic002G128750 Sobic001G248600--Sobic002G227800 Sobic005G135500 Sobic005G135500 Sobic001G248600--Sobic005G135500 Sobic001G248600--Sobic006G088500 Sobic002G044900 Sobic002G044900 Sobic001G248600--Sobic002G044900 Sobic001G248600--Sobic002G085700 Sobic003G118700 Sobic003G118700 Sobic001G248600--Sobic003G118700 Sobic001G248600--Sobic001G177500 Sobic001G248600--Sobic001G370100 Sobic004G193200--Sobic002G128750 Sobic002G192700 Sobic002G192700 Sobic004G193200--Sobic002G192700 Sobic004G193200--Sobic001G370100 Sobic004G193200--Sobic001G177500 Sobic009G237300 Sobic009G237300 Sobic004G193200--Sobic009G237300 Sobic010G266000 Sobic010G266000 Sobic004G193200--Sobic010G266000 Sobic003G064150 Sobic003G064150 Sobic004G193200--Sobic003G064150 Sobic004G193200--Sobic002G289701 Sobic001G489225 Sobic001G489225 Sobic004G193200--Sobic001G489225 Sobic001G521900 Sobic001G521900 Sobic006G062200--Sobic001G521900 Sobic002G252600 Sobic002G252600 Sobic006G062200--Sobic002G252600 Sobic004G159600 Sobic004G159600 Sobic006G062200--Sobic004G159600 Sobic006G062200--Sobic002G128750 Sobic006G062200--Sobic009G063450 Sobic006G062200--Sobic001G535300 Sobic006G062200--Sobic006G045200 Sobic006G062200--Sobic004G193200 Sobic001G444100 Sobic001G444100 Sobic006G062200--Sobic001G444100 Sobic009G063450--Sobic001G535300 Sobic009G063450--Sobic002G128750 Sobic002G057050 Sobic002G057050 Sobic009G063450--Sobic002G057050 Sobic009G031450 Sobic009G031450 Sobic009G063450--Sobic009G031450 Sobic004G290400 Sobic004G290400 Sobic009G063450--Sobic004G290400 Sobic009G063450--Sobic002G085700 Sobic001G482500 Sobic001G482500 Sobic009G063450--Sobic001G482500 Sobic001G327400 Sobic001G327400 Sobic009G063450--Sobic001G327400 Sobic002G267300 Sobic002G267300 Sobic009G063450--Sobic002G267300 Sobic001G535300--Sobic002G128750 Sobic007G022400 Sobic007G022400 Sobic001G535300--Sobic007G022400 Sobic001G535300--Sobic009G063450 Sobic001G535300--Sobic003G073700 Sobic001G535300--Sobic006G045200 Sobic010G187201 Sobic010G187201 Sobic001G535300--Sobic010G187201 Sobic001G535300--Sobic001G177500 Sobic001G535300--Sobic002G013500 Sobic001G535300--Sobic002G085700 Sobic003G073700--Sobic010G187201 Sobic003G073700--Sobic001G535300 Sobic006G281600 Sobic006G281600 Sobic003G073700--Sobic006G281600 Sobic003G073700--Sobic007G022400 Sobic003G167800 Sobic003G167800 Sobic003G073700--Sobic003G167800 Sobic003G073700--Sobic001G116200 Sobic003G244800 Sobic003G244800 Sobic003G073700--Sobic003G244800 Sobic003G073700--Sobic002G128750 Sobic001G252200 Sobic001G252200 Sobic003G073700--Sobic001G252200 Sobic005G212500 Sobic005G212500 Sobic010G115300--Sobic005G212500 Sobic009G045700 Sobic009G045700 Sobic010G115300--Sobic009G045700 Sobic009G100050 Sobic009G100050 Sobic010G115300--Sobic009G100050 Sobic008G136200 Sobic008G136200 Sobic010G115300--Sobic008G136200 Sobic010G144100 Sobic010G144100 Sobic010G115300--Sobic010G144100 Sobic003G020100 Sobic003G020100 Sobic010G115300--Sobic003G020100 Sobic005G077400 Sobic005G077400 Sobic010G115300--Sobic005G077400 Sobic010G113900 Sobic010G113900 Sobic010G115300--Sobic010G113900 Sobic003G383300 Sobic003G383300 Sobic010G115300--Sobic003G383300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.