Gene annotation
Transcriptome id Sobic.001G379200.1
Synonym Sb01g035980
Functional annotation tRNA pseudouridine synthase family protein, putative, expressed
UniProt C5X0R7
Pfam PF01416
Panther DB PTHR11142 PTHR11142:SF9
NCBI CDD KOG2553; Pseudouridylate synthase
KEGG Orthology K06173; truA, tRNA pseudouridine38-40 synthase
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT2G30320 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os03g21980.1 : tRNA pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002370
Brachypodium KQK21779
Barley -
Wheat TraesCS4A02G136700 , TraesCS4B02G167800 , TraesCS4D02G170500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G326300 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
3 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
4 Sobic.007G225000 copper-transporting ATPase PAA1, putative, expressed K01533: P-type Cu2+ transporter
5 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
6 Sobic.001G208700 ATTIC110/TIC110, putative, expressed -
7 Sobic.004G333700 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
8 Sobic.004G225600 - -
9 Sobic.008G092532 - -
10 Sobic.004G236400 AAA family ATPase, putative, expressed -
11 Sobic.009G046800 TOC159, putative, expressed -
12 Sobic.001G252500 expressed protein -
13 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
14 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
15 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
16 Sobic.003G438900 FYVE zinc finger domain containing protein, expressed -
17 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
18 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
19 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
20 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant


Gene co-expression network
sample Sobic001G379200 Sobic001G379200 Sobic001G326300 Sobic001G326300 Sobic001G379200--Sobic001G326300 Sobic001G022500 Sobic001G022500 Sobic001G379200--Sobic001G022500 Sobic001G246500 Sobic001G246500 Sobic001G379200--Sobic001G246500 Sobic007G225000 Sobic007G225000 Sobic001G379200--Sobic007G225000 Sobic004G263200 Sobic004G263200 Sobic001G379200--Sobic004G263200 Sobic001G208700 Sobic001G208700 Sobic001G379200--Sobic001G208700 Sobic004G333700 Sobic004G333700 Sobic001G379200--Sobic004G333700 Sobic004G225600 Sobic004G225600 Sobic001G379200--Sobic004G225600 Sobic008G092532 Sobic008G092532 Sobic001G379200--Sobic008G092532 Sobic004G019500 Sobic004G019500 Sobic001G326300--Sobic004G019500 Sobic001G326300--Sobic001G379200 Sobic001G326300--Sobic001G022500 Sobic004G351800 Sobic004G351800 Sobic001G326300--Sobic004G351800 Sobic002G055300 Sobic002G055300 Sobic001G326300--Sobic002G055300 Sobic004G144400 Sobic004G144400 Sobic001G326300--Sobic004G144400 Sobic005G197300 Sobic005G197300 Sobic001G326300--Sobic005G197300 Sobic001G326300--Sobic008G092532 Sobic002G181132 Sobic002G181132 Sobic001G326300--Sobic002G181132 Sobic003G434700 Sobic003G434700 Sobic001G022500--Sobic003G434700 Sobic001G022500--Sobic004G225600 Sobic004G003900 Sobic004G003900 Sobic001G022500--Sobic004G003900 Sobic003G162800 Sobic003G162800 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic003G067100 Sobic003G067100 Sobic001G022500--Sobic003G067100 Sobic001G375000 Sobic001G375000 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200 Sobic008G173100 Sobic008G173100 Sobic001G246500--Sobic008G173100 Sobic010G096000 Sobic010G096000 Sobic001G246500--Sobic010G096000 Sobic009G074700 Sobic009G074700 Sobic001G246500--Sobic009G074700 Sobic002G259800 Sobic002G259800 Sobic001G246500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic001G246500--Sobic001G306900 Sobic009G195200 Sobic009G195200 Sobic001G246500--Sobic009G195200 Sobic004G086200 Sobic004G086200 Sobic001G246500--Sobic004G086200 Sobic006G013500 Sobic006G013500 Sobic001G246500--Sobic006G013500 Sobic009G151200 Sobic009G151200 Sobic001G246500--Sobic009G151200 Sobic004G236400 Sobic004G236400 Sobic007G225000--Sobic004G236400 Sobic007G225000--Sobic003G067100 Sobic005G128400 Sobic005G128400 Sobic007G225000--Sobic005G128400 Sobic006G058100 Sobic006G058100 Sobic007G225000--Sobic006G058100 Sobic010G094700 Sobic010G094700 Sobic007G225000--Sobic010G094700 Sobic007G212300 Sobic007G212300 Sobic007G225000--Sobic007G212300 Sobic006G049900 Sobic006G049900 Sobic007G225000--Sobic006G049900 Sobic001G352900 Sobic001G352900 Sobic007G225000--Sobic001G352900 Sobic001G016600 Sobic001G016600 Sobic007G225000--Sobic001G016600 Sobic004G263200--Sobic003G162800 Sobic004G263200--Sobic003G327200 Sobic004G263200--Sobic004G003900 Sobic004G214400 Sobic004G214400 Sobic004G263200--Sobic004G214400 Sobic007G101300 Sobic007G101300 Sobic004G263200--Sobic007G101300 Sobic004G263200--Sobic005G197300 Sobic003G128400 Sobic003G128400 Sobic004G263200--Sobic003G128400 Sobic010G027200 Sobic010G027200 Sobic004G263200--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic004G263200--Sobic002G140000 Sobic008G088200 Sobic008G088200 Sobic001G208700--Sobic008G088200 Sobic006G056700 Sobic006G056700 Sobic001G208700--Sobic006G056700 Sobic009G085200 Sobic009G085200 Sobic001G208700--Sobic009G085200 Sobic004G213800 Sobic004G213800 Sobic001G208700--Sobic004G213800 Sobic009G129100 Sobic009G129100 Sobic001G208700--Sobic009G129100 Sobic001G058200 Sobic001G058200 Sobic001G208700--Sobic001G058200 Sobic001G208700--Sobic001G379200 Sobic004G137801 Sobic004G137801 Sobic001G208700--Sobic004G137801 Sobic006G096900 Sobic006G096900 Sobic001G208700--Sobic006G096900 Sobic004G333700--Sobic006G013500 Sobic009G000500 Sobic009G000500 Sobic004G333700--Sobic009G000500 Sobic003G445400 Sobic003G445400 Sobic004G333700--Sobic003G445400 Sobic006G076300 Sobic006G076300 Sobic004G333700--Sobic006G076300 Sobic001G315100 Sobic001G315100 Sobic004G333700--Sobic001G315100 Sobic004G031700 Sobic004G031700 Sobic004G333700--Sobic004G031700 Sobic005G015900 Sobic005G015900 Sobic004G333700--Sobic005G015900 Sobic006G133800 Sobic006G133800 Sobic004G333700--Sobic006G133800 Sobic008G152900 Sobic008G152900 Sobic004G333700--Sobic008G152900 Sobic004G225600--Sobic001G022500 Sobic004G208600 Sobic004G208600 Sobic004G225600--Sobic004G208600 Sobic004G225600--Sobic003G162800 Sobic004G225600--Sobic001G099000 Sobic007G095500 Sobic007G095500 Sobic004G225600--Sobic007G095500 Sobic004G225600--Sobic006G058100 Sobic004G225600--Sobic001G375000 Sobic004G225600--Sobic003G434700 Sobic005G184300 Sobic005G184300 Sobic004G225600--Sobic005G184300 Sobic001G227200 Sobic001G227200 Sobic008G092532--Sobic001G227200 Sobic004G258700 Sobic004G258700 Sobic008G092532--Sobic004G258700 Sobic007G054400 Sobic007G054400 Sobic008G092532--Sobic007G054400 Sobic010G277500 Sobic010G277500 Sobic008G092532--Sobic010G277500 Sobic003G101500 Sobic003G101500 Sobic008G092532--Sobic003G101500 Sobic010G172000 Sobic010G172000 Sobic008G092532--Sobic010G172000 Sobic007G225800 Sobic007G225800 Sobic008G092532--Sobic007G225800 Sobic007G210000 Sobic007G210000 Sobic008G092532--Sobic007G210000 Sobic004G107200 Sobic004G107200 Sobic008G092532--Sobic004G107200
Octagon: transcription factors


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