Gene annotation
Transcriptome id Sobic.004G333700.1
Synonym Sb04g036210
Functional annotation EF hand family protein, putative, expressed
UniProt C5XV26
Pfam PF13499
Panther DB PTHR23056 PTHR23056:SF52
NCBI CDD KOG0034; Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein
KEGG Orthology K06268; PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18430 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os02g55880.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032900
Brachypodium KQK01197
Barley HORVU5Hr1G073930.5 , HORVU5Hr1G073930.4 , HORVU5Hr1G073930.6 , HORVU5Hr1G073930.1 , HORVU6Hr1G087030.1 , HORVU6Hr1G087030.2 , HORVU6Hr1G087030.3 , HORVU6Hr1G087030.4 , HORVU6Hr1G087030.5
Wheat TraesCS5D02G277000 , TraesCS6B02G403400 , TraesCS6D02G350800 , TraesCS5A02G269000 , TraesCS5B02G269200 , TraesCS6A02G368000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
2 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
3 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
4 Sobic.006G076300 RING-H2 finger protein, putative, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
5 Sobic.001G315100 TKL_IRAK_CrRLK1L-1.16 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
6 Sobic.004G031700 expressed protein -
7 Sobic.005G015900 dnaJ domain containing protein, expressed -
8 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
9 Sobic.008G152900 MATH domain containing protein, expressed -
10 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
11 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
12 Sobic.001G206100 expressed protein -
13 Sobic.002G151600 R-interacting factor 1, putative, expressed -
14 Sobic.007G026000 ATBET9, putative, expressed -
15 Sobic.001G100800 mitochondrial carrier protein, putative, expressed -
16 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
18 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
19 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
20 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic004G333700 Sobic004G333700 Sobic006G013500 Sobic006G013500 Sobic004G333700--Sobic006G013500 Sobic009G000500 Sobic009G000500 Sobic004G333700--Sobic009G000500 Sobic003G445400 Sobic003G445400 Sobic004G333700--Sobic003G445400 Sobic006G076300 Sobic006G076300 Sobic004G333700--Sobic006G076300 Sobic001G315100 Sobic001G315100 Sobic004G333700--Sobic001G315100 Sobic004G031700 Sobic004G031700 Sobic004G333700--Sobic004G031700 Sobic005G015900 Sobic005G015900 Sobic004G333700--Sobic005G015900 Sobic006G133800 Sobic006G133800 Sobic004G333700--Sobic006G133800 Sobic008G152900 Sobic008G152900 Sobic004G333700--Sobic008G152900 Sobic001G206100 Sobic001G206100 Sobic006G013500--Sobic001G206100 Sobic001G257300 Sobic001G257300 Sobic006G013500--Sobic001G257300 Sobic001G306900 Sobic001G306900 Sobic006G013500--Sobic001G306900 Sobic006G080300 Sobic006G080300 Sobic006G013500--Sobic006G080300 Sobic006G013500--Sobic004G031700 Sobic006G013500--Sobic009G000500 Sobic003G197800 Sobic003G197800 Sobic006G013500--Sobic003G197800 Sobic001G094000 Sobic001G094000 Sobic006G013500--Sobic001G094000 Sobic006G046700 Sobic006G046700 Sobic006G013500--Sobic006G046700 Sobic009G000500--Sobic004G031700 Sobic009G000500--Sobic003G445400 Sobic002G320500 Sobic002G320500 Sobic009G000500--Sobic002G320500 Sobic006G128900 Sobic006G128900 Sobic009G000500--Sobic006G128900 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic009G000500--Sobic001G206100 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G445400--Sobic003G307000 Sobic002G158700 Sobic002G158700 Sobic003G445400--Sobic002G158700 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic001G511500 Sobic001G511500 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic002G144966 Sobic002G144966 Sobic006G076300--Sobic002G144966 Sobic001G303675 Sobic001G303675 Sobic006G076300--Sobic001G303675 Sobic009G065100 Sobic009G065100 Sobic006G076300--Sobic009G065100 Sobic006G076300--Sobic006G013500 Sobic002G259800 Sobic002G259800 Sobic006G076300--Sobic002G259800 Sobic006G076300--Sobic003G307000 Sobic001G454301 Sobic001G454301 Sobic006G076300--Sobic001G454301 Sobic006G076300--Sobic002G320500 Sobic006G076300--Sobic001G257300 Sobic001G315100--Sobic008G067600 Sobic001G315100--Sobic001G090400 Sobic003G084700 Sobic003G084700 Sobic001G315100--Sobic003G084700 Sobic004G084300 Sobic004G084300 Sobic001G315100--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic001G315100--Sobic002G157300 Sobic001G176200 Sobic001G176200 Sobic001G315100--Sobic001G176200 Sobic003G081000 Sobic003G081000 Sobic001G315100--Sobic003G081000 Sobic003G241200 Sobic003G241200 Sobic001G315100--Sobic003G241200 Sobic004G057400 Sobic004G057400 Sobic001G315100--Sobic004G057400 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic001G544200 Sobic001G544200 Sobic004G031700--Sobic001G544200 Sobic001G477800 Sobic001G477800 Sobic004G031700--Sobic001G477800 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic004G031700--Sobic002G158700 Sobic006G032400 Sobic006G032400 Sobic005G015900--Sobic006G032400 Sobic005G015900--Sobic004G031700 Sobic004G219100 Sobic004G219100 Sobic005G015900--Sobic004G219100 Sobic005G015900--Sobic001G176200 Sobic005G015900--Sobic002G320500 Sobic005G015900--Sobic001G090400 Sobic005G015900--Sobic002G158700 Sobic005G015900--Sobic001G303675 Sobic005G015900--Sobic003G445400 Sobic006G133800--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic006G133800--Sobic002G157000 Sobic006G133800--Sobic009G000500 Sobic001G107500 Sobic001G107500 Sobic006G133800--Sobic001G107500 Sobic002G248400 Sobic002G248400 Sobic006G133800--Sobic002G248400 Sobic006G133800--Sobic003G197800 Sobic006G133800--Sobic008G173900 Sobic009G210500 Sobic009G210500 Sobic006G133800--Sobic009G210500 Sobic006G133800--Sobic009G065100 Sobic008G152900--Sobic005G015900 Sobic001G464200 Sobic001G464200 Sobic008G152900--Sobic001G464200 Sobic001G425000 Sobic001G425000 Sobic008G152900--Sobic001G425000 Sobic008G152900--Sobic001G176200 Sobic008G152900--Sobic004G219100 Sobic004G197900 Sobic004G197900 Sobic008G152900--Sobic004G197900 Sobic006G078600 Sobic006G078600 Sobic008G152900--Sobic006G078600 Sobic008G152900--Sobic004G031700 Sobic008G152900--Sobic003G445400
Octagon: transcription factors


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