Gene annotation
Transcriptome id Sobic.005G204400.4,Sobic.005G204400.3,Sobic.005G204400.1
Synonym Sb05g025940
Functional annotation oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
UniProt C5Y7E7
Pfam PF13532
Panther DB PTHR13069 PTHR13069:SF29
NCBI CDD KOG3200; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02485 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os11g43610.1 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a015923 , Zm00025a020816
Brachypodium KQJ87445
Barley -
Wheat TraesCS6D02G314200 , TraesCS6B02G365100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G215300 expressed protein -
2 Sobic.001G213150 - -
3 Sobic.009G029800 endoglucanase, putative, expressed -
4 Sobic.003G060900 OsFBX320 - F-box domain containing protein, expressed -
5 Sobic.010G273200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.005G144101 - -
7 Sobic.001G152240 - -
8 Sobic.002G103400 - -
9 Sobic.010G091750 - -
10 Sobic.009G142700 - -
11 Sobic.010G228300 expressed protein -
12 Sobic.002G407500 sex determination protein tasselseed-2, putative, expressed -
13 Sobic.004G173800 - -
14 Sobic.003G141400 expressed protein -
15 Sobic.007G095850 - -
16 Sobic.006G004700 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
17 Sobic.007G087500 hypothetical protein -
18 Sobic.008G053700 - -
19 Sobic.010G266000 uncharacterized protein(PubMedID : 28640841)@expressed protein -
20 Sobic.003G118750 - -


Gene co-expression network
sample Sobic005G204400 Sobic005G204400 Sobic007G215300 Sobic007G215300 Sobic005G204400--Sobic007G215300 Sobic001G213150 Sobic001G213150 Sobic005G204400--Sobic001G213150 Sobic009G029800 Sobic009G029800 Sobic005G204400--Sobic009G029800 Sobic003G060900 Sobic003G060900 Sobic005G204400--Sobic003G060900 Sobic010G273200 Sobic010G273200 Sobic005G204400--Sobic010G273200 Sobic005G144101 Sobic005G144101 Sobic005G204400--Sobic005G144101 Sobic001G152240 Sobic001G152240 Sobic005G204400--Sobic001G152240 Sobic002G103400 Sobic002G103400 Sobic005G204400--Sobic002G103400 Sobic010G091750 Sobic010G091750 Sobic005G204400--Sobic010G091750 Sobic007G215300--Sobic001G213150 Sobic007G215300--Sobic009G029800 Sobic007G215300--Sobic003G060900 Sobic007G215300--Sobic005G204400 Sobic010G228300 Sobic010G228300 Sobic007G215300--Sobic010G228300 Sobic009G142700 Sobic009G142700 Sobic007G215300--Sobic009G142700 Sobic007G095850 Sobic007G095850 Sobic007G215300--Sobic007G095850 Sobic007G215300--Sobic010G273200 Sobic007G215300--Sobic005G144101 Sobic001G213150--Sobic009G029800 Sobic001G213150--Sobic003G060900 Sobic001G213150--Sobic007G215300 Sobic001G213150--Sobic010G273200 Sobic001G213150--Sobic005G144101 Sobic001G213150--Sobic005G204400 Sobic001G213150--Sobic010G091750 Sobic001G213150--Sobic002G103400 Sobic003G141400 Sobic003G141400 Sobic001G213150--Sobic003G141400 Sobic009G029800--Sobic001G213150 Sobic009G029800--Sobic003G060900 Sobic009G029800--Sobic010G273200 Sobic009G029800--Sobic005G144101 Sobic009G029800--Sobic007G215300 Sobic009G029800--Sobic002G103400 Sobic009G029800--Sobic001G152240 Sobic009G029800--Sobic010G091750 Sobic009G029800--Sobic003G141400 Sobic003G060900--Sobic001G213150 Sobic003G060900--Sobic010G273200 Sobic003G060900--Sobic009G029800 Sobic003G060900--Sobic005G144101 Sobic003G060900--Sobic010G091750 Sobic003G060900--Sobic007G215300 Sobic003G060900--Sobic002G103400 Sobic003G060900--Sobic001G152240 Sobic003G060900--Sobic005G204400 Sobic010G273200--Sobic005G144101 Sobic010G273200--Sobic001G152240 Sobic010G273200--Sobic002G103400 Sobic010G273200--Sobic010G091750 Sobic010G273200--Sobic003G060900 Sobic010G273200--Sobic009G029800 Sobic004G173800 Sobic004G173800 Sobic010G273200--Sobic004G173800 Sobic007G087500 Sobic007G087500 Sobic010G273200--Sobic007G087500 Sobic006G004700 Sobic006G004700 Sobic010G273200--Sobic006G004700 Sobic005G144101--Sobic010G273200 Sobic005G144101--Sobic002G103400 Sobic005G144101--Sobic001G152240 Sobic005G144101--Sobic010G091750 Sobic005G144101--Sobic004G173800 Sobic005G144101--Sobic006G004700 Sobic008G053700 Sobic008G053700 Sobic005G144101--Sobic008G053700 Sobic005G144101--Sobic007G087500 Sobic005G144101--Sobic009G029800 Sobic001G152240--Sobic002G103400 Sobic001G152240--Sobic010G273200 Sobic001G152240--Sobic005G144101 Sobic001G152240--Sobic004G173800 Sobic001G152240--Sobic008G053700 Sobic001G152240--Sobic006G004700 Sobic001G152240--Sobic010G091750 Sobic001G152240--Sobic007G087500 Sobic003G046000 Sobic003G046000 Sobic001G152240--Sobic003G046000 Sobic002G103400--Sobic001G152240 Sobic002G103400--Sobic005G144101 Sobic002G103400--Sobic010G273200 Sobic002G103400--Sobic008G053700 Sobic002G103400--Sobic006G004700 Sobic002G103400--Sobic010G091750 Sobic002G103400--Sobic004G173800 Sobic002G103400--Sobic007G087500 Sobic002G103400--Sobic003G046000 Sobic010G091750--Sobic002G103400 Sobic010G091750--Sobic010G273200 Sobic010G091750--Sobic007G087500 Sobic010G091750--Sobic005G144101 Sobic010G091750--Sobic001G152240 Sobic010G091750--Sobic006G004700 Sobic010G091750--Sobic008G053700 Sobic010G091750--Sobic004G173800 Sobic001G452300 Sobic001G452300 Sobic010G091750--Sobic001G452300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.