Gene annotation
Transcriptome id Sobic.006G111700.1
Synonym Sb06g019370, EMB1873, ATAIH
Functional annotation agmatine deiminase, putative, expressed
UniProt C5YA84 , A0A097PRT5
Pfam PF04371
Panther DB PTHR31377 PTHR31377:SF2
NCBI CDD -
KEGG Orthology K10536; agmatine deiminase
Gene Ontology GO:0009446; putrescine biosynthetic process GO:0004668protein-arginine deiminase activity


Orthologs (automatic annotation)
TAIR AT5G08170 : porphyromonas-type peptidyl-arginine deiminase family protein
RAP-DB (Rice) LOC_Os04g39210.1 : agmatine deiminase, putative, expressed
MaizeGDB (Corn) Zm00025a056246
Brachypodium KQJ83052
Barley HORVU2Hr1G081370.1 , HORVU2Hr1G081370.3 , HORVU2Hr1G081370.2 , HORVU2Hr1G081370.5 , HORVU2Hr1G081370.4
Wheat TraesCS2B02G347800 , TraesCS2D02G328900 , TraesCS5D02G198300 , TraesCS5D02G198300 , TraesCS2A02G334600 , TraesCS5A02G195100 , TraesCS5A02G195100 , TraesCS5A02G195100
Populus -


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cDNA sequences
Sobic.006G111700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G203500 pentatricopeptide, putative, expressed -
2 Sobic.005G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.008G078000 EDM2, putative, expressed -
4 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
5 Sobic.010G042700 expressed protein -
6 Sobic.003G349000 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
7 Sobic.009G167100 TBC domain containing protein, expressed -
8 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
9 Sobic.001G496600 expressed protein -
10 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
11 Sobic.003G431600 expressed protein -
12 Sobic.003G072500 transcription factor X1, putative, expressed -
13 Sobic.007G000700 choline transporter-related, putative, expressed K15377: solute carrier family 44 (choline transporter-like protein), member 2/4/5
14 Sobic.009G201900 peptidyl-tRNA hydrolase, putative, expressed K04794: peptidyl-tRNA hydrolase, PTH2 family
15 Sobic.006G143200 - K14805: DDX24, ATP-dependent RNA helicase DDX24/MAK5
16 Sobic.002G320600 HEAT repeat family protein, putative, expressed -
17 Sobic.007G039300 ATP-binding region, ATPase-like domain containing protein, expressed -
18 Sobic.009G177200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
19 Sobic.001G523700 erythronate-4-phosphate dehydrogenase, putative, expressed -
20 Sobic.006G275000 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ


Gene co-expression network
sample Sobic006G111700 Sobic006G111700 Sobic001G203500 Sobic001G203500 Sobic006G111700--Sobic001G203500 Sobic005G017000 Sobic005G017000 Sobic006G111700--Sobic005G017000 Sobic008G078000 Sobic008G078000 Sobic006G111700--Sobic008G078000 Sobic009G231100 Sobic009G231100 Sobic006G111700--Sobic009G231100 Sobic010G042700 Sobic010G042700 Sobic006G111700--Sobic010G042700 Sobic003G349000 Sobic003G349000 Sobic006G111700--Sobic003G349000 Sobic009G167100 Sobic009G167100 Sobic006G111700--Sobic009G167100 Sobic001G541000 Sobic001G541000 Sobic006G111700--Sobic001G541000 Sobic001G496600 Sobic001G496600 Sobic006G111700--Sobic001G496600 Sobic003G431600 Sobic003G431600 Sobic001G203500--Sobic003G431600 Sobic004G157500 Sobic004G157500 Sobic001G203500--Sobic004G157500 Sobic004G064600 Sobic004G064600 Sobic001G203500--Sobic004G064600 Sobic004G354100 Sobic004G354100 Sobic001G203500--Sobic004G354100 Sobic006G265600 Sobic006G265600 Sobic001G203500--Sobic006G265600 Sobic002G426100 Sobic002G426100 Sobic001G203500--Sobic002G426100 Sobic009G260700 Sobic009G260700 Sobic001G203500--Sobic009G260700 Sobic001G191900 Sobic001G191900 Sobic001G203500--Sobic001G191900 Sobic003G135500 Sobic003G135500 Sobic001G203500--Sobic003G135500 Sobic005G017000--Sobic008G078000 Sobic008G174966 Sobic008G174966 Sobic005G017000--Sobic008G174966 Sobic005G017000--Sobic009G167100 Sobic009G061000 Sobic009G061000 Sobic005G017000--Sobic009G061000 Sobic001G023500 Sobic001G023500 Sobic005G017000--Sobic001G023500 Sobic004G118800 Sobic004G118800 Sobic005G017000--Sobic004G118800 Sobic001G154300 Sobic001G154300 Sobic005G017000--Sobic001G154300 Sobic005G064100 Sobic005G064100 Sobic005G017000--Sobic005G064100 Sobic008G101900 Sobic008G101900 Sobic005G017000--Sobic008G101900 Sobic001G465500 Sobic001G465500 Sobic008G078000--Sobic001G465500 Sobic008G078000--Sobic005G017000 Sobic003G331000 Sobic003G331000 Sobic008G078000--Sobic003G331000 Sobic003G343200 Sobic003G343200 Sobic008G078000--Sobic003G343200 Sobic005G160200 Sobic005G160200 Sobic008G078000--Sobic005G160200 Sobic002G123600 Sobic002G123600 Sobic008G078000--Sobic002G123600 Sobic008G078000--Sobic004G118800 Sobic010G222800 Sobic010G222800 Sobic008G078000--Sobic010G222800 Sobic002G239601 Sobic002G239601 Sobic008G078000--Sobic002G239601 Sobic009G201900 Sobic009G201900 Sobic009G231100--Sobic009G201900 Sobic002G225000 Sobic002G225000 Sobic009G231100--Sobic002G225000 Sobic002G377300 Sobic002G377300 Sobic009G231100--Sobic002G377300 Sobic001G518200 Sobic001G518200 Sobic009G231100--Sobic001G518200 Sobic003G420900 Sobic003G420900 Sobic009G231100--Sobic003G420900 Sobic003G223000 Sobic003G223000 Sobic009G231100--Sobic003G223000 Sobic005G031000 Sobic005G031000 Sobic009G231100--Sobic005G031000 Sobic001G104300 Sobic001G104300 Sobic009G231100--Sobic001G104300 Sobic005G022000 Sobic005G022000 Sobic009G231100--Sobic005G022000 Sobic009G216500 Sobic009G216500 Sobic010G042700--Sobic009G216500 Sobic003G067201 Sobic003G067201 Sobic010G042700--Sobic003G067201 Sobic003G289700 Sobic003G289700 Sobic010G042700--Sobic003G289700 Sobic004G020900 Sobic004G020900 Sobic010G042700--Sobic004G020900 Sobic007G053700 Sobic007G053700 Sobic010G042700--Sobic007G053700 Sobic002G057050 Sobic002G057050 Sobic010G042700--Sobic002G057050 Sobic010G042700--Sobic002G239601 Sobic010G042700--Sobic001G541000 Sobic010G042700--Sobic001G496600 Sobic002G154400 Sobic002G154400 Sobic003G349000--Sobic002G154400 Sobic002G312800 Sobic002G312800 Sobic003G349000--Sobic002G312800 Sobic001G141700 Sobic001G141700 Sobic003G349000--Sobic001G141700 Sobic003G282700 Sobic003G282700 Sobic003G349000--Sobic003G282700 Sobic003G349000--Sobic007G053700 Sobic010G237800 Sobic010G237800 Sobic003G349000--Sobic010G237800 Sobic009G042100 Sobic009G042100 Sobic003G349000--Sobic009G042100 Sobic010G241600 Sobic010G241600 Sobic003G349000--Sobic010G241600 Sobic002G056000 Sobic002G056000 Sobic003G349000--Sobic002G056000 Sobic010G250800 Sobic010G250800 Sobic009G167100--Sobic010G250800 Sobic009G167100--Sobic009G061000 Sobic006G257200 Sobic006G257200 Sobic009G167100--Sobic006G257200 Sobic001G385400 Sobic001G385400 Sobic009G167100--Sobic001G385400 Sobic008G015200 Sobic008G015200 Sobic009G167100--Sobic008G015200 Sobic002G320600 Sobic002G320600 Sobic009G167100--Sobic002G320600 Sobic003G027800 Sobic003G027800 Sobic009G167100--Sobic003G027800 Sobic009G052100 Sobic009G052100 Sobic009G167100--Sobic009G052100 Sobic008G192700 Sobic008G192700 Sobic009G167100--Sobic008G192700 Sobic001G036300 Sobic001G036300 Sobic001G541000--Sobic001G036300 Sobic003G177000 Sobic003G177000 Sobic001G541000--Sobic003G177000 Sobic001G300000 Sobic001G300000 Sobic001G541000--Sobic001G300000 Sobic009G101000 Sobic009G101000 Sobic001G541000--Sobic009G101000 Sobic007G184100 Sobic007G184100 Sobic001G541000--Sobic007G184100 Sobic006G280100 Sobic006G280100 Sobic001G541000--Sobic006G280100 Sobic001G541000--Sobic003G431600 Sobic001G541000--Sobic003G135500 Sobic010G153300 Sobic010G153300 Sobic001G541000--Sobic010G153300 Sobic001G496600--Sobic003G289700 Sobic001G496600--Sobic003G343200 Sobic003G320100 Sobic003G320100 Sobic001G496600--Sobic003G320100 Sobic010G257500 Sobic010G257500 Sobic001G496600--Sobic010G257500 Sobic001G496600--Sobic010G222800 Sobic002G377200 Sobic002G377200 Sobic001G496600--Sobic002G377200 Sobic001G496600--Sobic002G123600 Sobic008G180200 Sobic008G180200 Sobic001G496600--Sobic008G180200 Sobic001G496600--Sobic008G078000
Octagon: transcription factors


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