Gene annotation
Transcriptome id Sobic.007G000700.1
Synonym Sb07g000250
Functional annotation choline transporter-related, putative, expressed
UniProt C5YLC4
Pfam PF04515
Panther DB PTHR12385 PTHR12385:SF47
NCBI CDD KOG1362; Choline transporter-like protein
KEGG Orthology K15377; solute carrier family 44 (choline transporter-like protein), member 2/4/5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15380 : Plasma-membrane choline transporter family protein
RAP-DB (Rice) LOC_Os04g58470.1 : choline transporter-related, putative, expressed
MaizeGDB (Corn) Zm00025a009265 , Zm00025a033656
Brachypodium KQJ94749 , KQJ85342 , PNT66483
Barley HORVU2Hr1G122730.3 , HORVU2Hr1G122730.2 , HORVU2Hr1G122730.5 , HORVU2Hr1G122730.4 , HORVU2Hr1G122730.7 , HORVU2Hr1G122730.6 , HORVU2Hr1G122730.9 , HORVU2Hr1G122730.8 , HORVU7Hr1G078730.9 , HORVU7Hr1G078730.3 , HORVU7Hr1G078730.12 , HORVU7Hr1G078730.13 , HORVU7Hr1G078730.10 , HORVU7Hr1G078730.11 , HORVU7Hr1G078730.16 , HORVU7Hr1G078730.17 , HORVU7Hr1G078730.14 , HORVU7Hr1G078730.15 , HORVU7Hr1G078730.18 , HORVU7Hr1G078730.8
Wheat TraesCS7B02G229800 , TraesCS7B02G229800 , TraesCS7A02G329100 , TraesCS7A02G329100 , TraesCS7A02G329100 , TraesCS2A02G585800 , TraesCS2B02G597400 , TraesCS2D02G600700 , TraesCS7D02G326000 , TraesCS7D02G326000
Populus -


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cDNA sequences
Sobic.007G000700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G401800 expressed protein -
2 Sobic.006G081000 protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1
3 Sobic.003G226700 kinesin motor domain containing protein, putative, expressed K10393: KIF2_24, kinesin family member 2/24
4 Sobic.002G320600 HEAT repeat family protein, putative, expressed -
5 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
6 Sobic.010G078300 leaf senescence related protein, putative, expressed -
7 Sobic.003G078300 leucine-rich repeat protein-related, putative, expressed -
8 Sobic.005G062600 MLO domain containing protein, putative, expressed K08472: mlo protein
9 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
10 Sobic.007G116800 BURP domain containing protein, expressed -
11 Sobic.005G143100 expressed protein -
12 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
13 Sobic.001G051300 BEE 1, putative, expressed -
14 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -
15 Sobic.001G201000 protein transport protein-related, putative, expressed -
16 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
17 Sobic.002G370400 expressed protein -
18 Sobic.002G362700 zinc finger family protein, putative, expressed -
19 Sobic.010G211800 TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
20 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2


Gene co-expression network
sample Sobic007G000700 Sobic007G000700 Sobic003G401800 Sobic003G401800 Sobic007G000700--Sobic003G401800 Sobic006G081000 Sobic006G081000 Sobic007G000700--Sobic006G081000 Sobic003G226700 Sobic003G226700 Sobic007G000700--Sobic003G226700 Sobic002G320600 Sobic002G320600 Sobic007G000700--Sobic002G320600 Sobic010G092400 Sobic010G092400 Sobic007G000700--Sobic010G092400 Sobic010G078300 Sobic010G078300 Sobic007G000700--Sobic010G078300 Sobic003G078300 Sobic003G078300 Sobic007G000700--Sobic003G078300 Sobic005G062600 Sobic005G062600 Sobic007G000700--Sobic005G062600 Sobic003G289800 Sobic003G289800 Sobic007G000700--Sobic003G289800 Sobic003G401800--Sobic007G000700 Sobic003G401800--Sobic003G226700 Sobic003G401800--Sobic003G078300 Sobic010G211800 Sobic010G211800 Sobic003G401800--Sobic010G211800 Sobic003G401800--Sobic002G320600 Sobic009G128800 Sobic009G128800 Sobic003G401800--Sobic009G128800 Sobic001G437500 Sobic001G437500 Sobic003G401800--Sobic001G437500 Sobic001G425700 Sobic001G425700 Sobic003G401800--Sobic001G425700 Sobic010G165900 Sobic010G165900 Sobic003G401800--Sobic010G165900 Sobic004G274800 Sobic004G274800 Sobic006G081000--Sobic004G274800 Sobic006G081000--Sobic001G437500 Sobic001G196000 Sobic001G196000 Sobic006G081000--Sobic001G196000 Sobic006G081000--Sobic007G000700 Sobic004G243800 Sobic004G243800 Sobic006G081000--Sobic004G243800 Sobic002G347900 Sobic002G347900 Sobic006G081000--Sobic002G347900 Sobic007G139500 Sobic007G139500 Sobic006G081000--Sobic007G139500 Sobic006G081000--Sobic003G401800 Sobic002G276600 Sobic002G276600 Sobic006G081000--Sobic002G276600 Sobic007G084200 Sobic007G084200 Sobic003G226700--Sobic007G084200 Sobic003G420300 Sobic003G420300 Sobic003G226700--Sobic003G420300 Sobic003G292700 Sobic003G292700 Sobic003G226700--Sobic003G292700 Sobic003G226700--Sobic001G425700 Sobic003G226700--Sobic003G289800 Sobic009G212100 Sobic009G212100 Sobic003G226700--Sobic009G212100 Sobic001G487200 Sobic001G487200 Sobic003G226700--Sobic001G487200 Sobic004G315700 Sobic004G315700 Sobic003G226700--Sobic004G315700 Sobic003G024000 Sobic003G024000 Sobic003G226700--Sobic003G024000 Sobic003G031700 Sobic003G031700 Sobic002G320600--Sobic003G031700 Sobic001G201000 Sobic001G201000 Sobic002G320600--Sobic001G201000 Sobic002G320600--Sobic003G420300 Sobic002G320600--Sobic003G292700 Sobic002G320600--Sobic010G211800 Sobic002G362700 Sobic002G362700 Sobic002G320600--Sobic002G362700 Sobic002G320600--Sobic003G226700 Sobic008G127550 Sobic008G127550 Sobic002G320600--Sobic008G127550 Sobic004G328300 Sobic004G328300 Sobic002G320600--Sobic004G328300 Sobic007G116800 Sobic007G116800 Sobic010G092400--Sobic007G116800 Sobic010G092400--Sobic005G062600 Sobic003G085900 Sobic003G085900 Sobic010G092400--Sobic003G085900 Sobic007G007800 Sobic007G007800 Sobic010G092400--Sobic007G007800 Sobic009G184200 Sobic009G184200 Sobic010G092400--Sobic009G184200 Sobic010G269700 Sobic010G269700 Sobic010G092400--Sobic010G269700 Sobic007G087800 Sobic007G087800 Sobic010G092400--Sobic007G087800 Sobic003G387700 Sobic003G387700 Sobic010G092400--Sobic003G387700 Sobic008G070700 Sobic008G070700 Sobic010G092400--Sobic008G070700 Sobic010G022000 Sobic010G022000 Sobic010G078300--Sobic010G022000 Sobic010G078300--Sobic007G000700 Sobic002G314800 Sobic002G314800 Sobic010G078300--Sobic002G314800 Sobic001G518000 Sobic001G518000 Sobic010G078300--Sobic001G518000 Sobic010G078300--Sobic010G211800 Sobic010G078300--Sobic010G092400 Sobic009G216300 Sobic009G216300 Sobic010G078300--Sobic009G216300 Sobic010G078300--Sobic003G401800 Sobic010G078300--Sobic005G062600 Sobic002G311000 Sobic002G311000 Sobic003G078300--Sobic002G311000 Sobic004G253500 Sobic004G253500 Sobic003G078300--Sobic004G253500 Sobic001G461800 Sobic001G461800 Sobic003G078300--Sobic001G461800 Sobic001G389600 Sobic001G389600 Sobic003G078300--Sobic001G389600 Sobic006G257200 Sobic006G257200 Sobic003G078300--Sobic006G257200 Sobic003G291000 Sobic003G291000 Sobic003G078300--Sobic003G291000 Sobic002G045200 Sobic002G045200 Sobic003G078300--Sobic002G045200 Sobic003G250000 Sobic003G250000 Sobic003G078300--Sobic003G250000 Sobic003G078300--Sobic002G362700 Sobic004G267600 Sobic004G267600 Sobic005G062600--Sobic004G267600 Sobic005G062600--Sobic010G092400 Sobic007G121600 Sobic007G121600 Sobic005G062600--Sobic007G121600 Sobic001G079900 Sobic001G079900 Sobic005G062600--Sobic001G079900 Sobic010G129700 Sobic010G129700 Sobic005G062600--Sobic010G129700 Sobic007G161600 Sobic007G161600 Sobic005G062600--Sobic007G161600 Sobic001G493900 Sobic001G493900 Sobic005G062600--Sobic001G493900 Sobic005G062600--Sobic008G070700 Sobic003G019900 Sobic003G019900 Sobic005G062600--Sobic003G019900 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic009G087000 Sobic009G087000 Sobic003G289800--Sobic009G087000 Sobic001G051300 Sobic001G051300 Sobic003G289800--Sobic001G051300 Sobic003G183700 Sobic003G183700 Sobic003G289800--Sobic003G183700 Sobic003G289800--Sobic003G420300 Sobic003G179500 Sobic003G179500 Sobic003G289800--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G289800--Sobic005G110535 Sobic003G389100 Sobic003G389100 Sobic003G289800--Sobic003G389100 Sobic010G147700 Sobic010G147700 Sobic003G289800--Sobic010G147700
Octagon: transcription factors


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