Gene annotation
Transcriptome id Sobic.008G078000.5,Sobic.008G078000.3,Sobic.008G078000.4,Sobic.008G078000.1,Sobic.008G078000.8,Sobic.008G078000.2,Sobic.008G078000.7,Sobic.008G078000.6
Synonym Sb08g007170, EDM2
Functional annotation EDM2, putative, expressed
UniProt A0A1Z5R599 , A0A1Z5R5A2 , A0A1Z5R5V4 , A0A1B6PC71 , A0A1Z5R5G3
Pfam -
Panther DB PTHR22884 PTHR22884:SF340
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55390 : ENHANCED DOWNY MILDEW 2,EDM2-like protein1
RAP-DB (Rice) LOC_Os12g12300.1 : EDM2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.008G078000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465500 radical SAM enzyme, putative, expressed -
2 Sobic.005G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.003G331000 exostosin family domain containing protein, expressed -
4 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
5 Sobic.005G160200 sialyltransferase family domain containing protein, expressed -
6 Sobic.002G123600 expressed protein -
7 Sobic.004G118800 receptor lectin kinase like protein, putative, expressed -
8 Sobic.010G222800 expressed protein -
9 Sobic.002G239601 - -
10 Sobic.006G127200 kelch repeat protein, putative, expressed -
11 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
12 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
13 Sobic.003G360300 exostosin family domain containing protein, expressed -
14 Sobic.004G129500 expressed protein -
15 Sobic.004G030400 expressed protein -
16 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
17 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
18 Sobic.004G078500 Leucine Rich Repeat family protein, expressed -
19 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
20 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I


Gene co-expression network
sample Sobic008G078000 Sobic008G078000 Sobic001G465500 Sobic001G465500 Sobic008G078000--Sobic001G465500 Sobic005G017000 Sobic005G017000 Sobic008G078000--Sobic005G017000 Sobic003G331000 Sobic003G331000 Sobic008G078000--Sobic003G331000 Sobic003G343200 Sobic003G343200 Sobic008G078000--Sobic003G343200 Sobic005G160200 Sobic005G160200 Sobic008G078000--Sobic005G160200 Sobic002G123600 Sobic002G123600 Sobic008G078000--Sobic002G123600 Sobic004G118800 Sobic004G118800 Sobic008G078000--Sobic004G118800 Sobic010G222800 Sobic010G222800 Sobic008G078000--Sobic010G222800 Sobic002G239601 Sobic002G239601 Sobic008G078000--Sobic002G239601 Sobic001G465500--Sobic008G078000 Sobic002G335500 Sobic002G335500 Sobic001G465500--Sobic002G335500 Sobic004G078500 Sobic004G078500 Sobic001G465500--Sobic004G078500 Sobic003G028400 Sobic003G028400 Sobic001G465500--Sobic003G028400 Sobic002G208400 Sobic002G208400 Sobic001G465500--Sobic002G208400 Sobic004G030400 Sobic004G030400 Sobic001G465500--Sobic004G030400 Sobic001G465500--Sobic003G331000 Sobic003G129300 Sobic003G129300 Sobic001G465500--Sobic003G129300 Sobic001G436300 Sobic001G436300 Sobic001G465500--Sobic001G436300 Sobic005G017000--Sobic008G078000 Sobic008G174966 Sobic008G174966 Sobic005G017000--Sobic008G174966 Sobic009G167100 Sobic009G167100 Sobic005G017000--Sobic009G167100 Sobic009G061000 Sobic009G061000 Sobic005G017000--Sobic009G061000 Sobic001G023500 Sobic001G023500 Sobic005G017000--Sobic001G023500 Sobic005G017000--Sobic004G118800 Sobic001G154300 Sobic001G154300 Sobic005G017000--Sobic001G154300 Sobic005G064100 Sobic005G064100 Sobic005G017000--Sobic005G064100 Sobic008G101900 Sobic008G101900 Sobic005G017000--Sobic008G101900 Sobic003G259600 Sobic003G259600 Sobic003G331000--Sobic003G259600 Sobic009G122900 Sobic009G122900 Sobic003G331000--Sobic009G122900 Sobic003G331000--Sobic003G028400 Sobic003G331000--Sobic002G123600 Sobic001G123600 Sobic001G123600 Sobic003G331000--Sobic001G123600 Sobic001G242300 Sobic001G242300 Sobic003G331000--Sobic001G242300 Sobic003G331000--Sobic005G160200 Sobic003G298900 Sobic003G298900 Sobic003G331000--Sobic003G298900 Sobic003G360300 Sobic003G360300 Sobic003G331000--Sobic003G360300 Sobic003G343200--Sobic010G222800 Sobic010G257500 Sobic010G257500 Sobic003G343200--Sobic010G257500 Sobic002G271400 Sobic002G271400 Sobic003G343200--Sobic002G271400 Sobic001G534400 Sobic001G534400 Sobic003G343200--Sobic001G534400 Sobic003G411700 Sobic003G411700 Sobic003G343200--Sobic003G411700 Sobic004G014100 Sobic004G014100 Sobic003G343200--Sobic004G014100 Sobic003G289700 Sobic003G289700 Sobic003G343200--Sobic003G289700 Sobic004G306100 Sobic004G306100 Sobic003G343200--Sobic004G306100 Sobic010G024000 Sobic010G024000 Sobic003G343200--Sobic010G024000 Sobic005G160200--Sobic004G014100 Sobic005G160200--Sobic003G411700 Sobic005G160200--Sobic003G343200 Sobic006G091850 Sobic006G091850 Sobic005G160200--Sobic006G091850 Sobic002G315100 Sobic002G315100 Sobic005G160200--Sobic002G315100 Sobic010G038900 Sobic010G038900 Sobic005G160200--Sobic010G038900 Sobic005G160200--Sobic010G257500 Sobic005G160200--Sobic001G534400 Sobic004G350200 Sobic004G350200 Sobic005G160200--Sobic004G350200 Sobic006G127200 Sobic006G127200 Sobic002G123600--Sobic006G127200 Sobic008G090400 Sobic008G090400 Sobic002G123600--Sobic008G090400 Sobic002G123600--Sobic004G306100 Sobic002G095300 Sobic002G095300 Sobic002G123600--Sobic002G095300 Sobic002G123600--Sobic002G271400 Sobic003G397100 Sobic003G397100 Sobic002G123600--Sobic003G397100 Sobic002G123600--Sobic001G242300 Sobic002G123600--Sobic003G411700 Sobic004G129500 Sobic004G129500 Sobic002G123600--Sobic004G129500 Sobic001G371700 Sobic001G371700 Sobic004G118800--Sobic001G371700 Sobic004G118800--Sobic008G101900 Sobic002G001100 Sobic002G001100 Sobic004G118800--Sobic002G001100 Sobic008G038200 Sobic008G038200 Sobic004G118800--Sobic008G038200 Sobic003G177000 Sobic003G177000 Sobic004G118800--Sobic003G177000 Sobic004G118800--Sobic008G078000 Sobic004G118800--Sobic005G017000 Sobic001G298800 Sobic001G298800 Sobic004G118800--Sobic001G298800 Sobic002G425200 Sobic002G425200 Sobic004G118800--Sobic002G425200 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic010G222800--Sobic003G411700 Sobic002G112000 Sobic002G112000 Sobic010G222800--Sobic002G112000 Sobic008G070700 Sobic008G070700 Sobic010G222800--Sobic008G070700 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic008G131900 Sobic008G131900 Sobic010G222800--Sobic008G131900 Sobic002G386900 Sobic002G386900 Sobic002G239601--Sobic002G386900 Sobic002G239601--Sobic001G123600 Sobic002G386600 Sobic002G386600 Sobic002G239601--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic002G239601--Sobic004G356200 Sobic007G034200 Sobic007G034200 Sobic002G239601--Sobic007G034200 Sobic008G123300 Sobic008G123300 Sobic002G239601--Sobic008G123300 Sobic002G239601--Sobic003G360300 Sobic003G299500 Sobic003G299500 Sobic002G239601--Sobic003G299500 Sobic001G200200 Sobic001G200200 Sobic002G239601--Sobic001G200200
Octagon: transcription factors


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