Gene annotation
Transcriptome id Sobic.005G017000.1,Sobic.005G017000.2
Synonym Sb05g001450
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein kinase APK1B, chloroplast precursor, putative, expressed
UniProt C5Y3K6 , A0A1Z5RG58
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF136
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G01020 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os06g45280.1 : protein kinase APK1B, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a013164 , Zm00025a033329
Brachypodium KQJ89490 , KQJ89489 , KQJ89488 , KQJ92509 , PNT65545
Barley HORVU4Hr1G023850.10 , HORVU4Hr1G023850.11 , HORVU5Hr1G046020.9 , HORVU5Hr1G046020.8 , HORVU5Hr1G046020.3 , HORVU5Hr1G046020.2 , HORVU5Hr1G046020.1 , HORVU5Hr1G046020.7 , HORVU5Hr1G046020.6 , HORVU5Hr1G046020.5 , HORVU5Hr1G046020.4 , HORVU5Hr1G046020.13 , HORVU5Hr1G046020.12 , HORVU5Hr1G046020.11 , HORVU5Hr1G046020.10 , HORVU5Hr1G046020.16 , HORVU5Hr1G046020.15 , HORVU5Hr1G046020.14 , HORVU4Hr1G023850.2 , HORVU4Hr1G023850.3 , HORVU4Hr1G023850.1 , HORVU4Hr1G023850.6 , HORVU4Hr1G023850.7 , HORVU4Hr1G023850.4 , HORVU4Hr1G023850.5 , HORVU4Hr1G023850.8 , HORVU4Hr1G023850.9
Wheat TraesCS4B02G123800 , TraesCS4B02G123800 , TraesCS5B02G143500 , TraesCS5B02G143500 , TraesCS5A02G144600 , TraesCS4A02G191500 , TraesCS4A02G191500 , TraesCS4A02G191500 , TraesCS4D02G121800 , TraesCS4D02G121800 , TraesCS4D02G121800 , TraesCS5D02G147600 , TraesCS5D02G147600 , TraesCS5A02G144600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G078000 EDM2, putative, expressed -
2 Sobic.008G174966 - -
3 Sobic.009G167100 TBC domain containing protein, expressed -
4 Sobic.009G061000 DNA binding protein, putative, expressed -
5 Sobic.001G023500 expressed protein -
6 Sobic.004G118800 receptor lectin kinase like protein, putative, expressed -
7 Sobic.001G154300 DNA binding protein, putative, expressed -
8 Sobic.005G064100 expressed protein -
9 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
10 Sobic.006G238600 chloride channel protein, putative, expressed K05016: chloride channel 7
11 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
12 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
13 Sobic.002G320600 HEAT repeat family protein, putative, expressed -
14 Sobic.006G071628 - -
15 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
16 Sobic.002G123600 expressed protein -
17 Sobic.007G000700 choline transporter-related, putative, expressed K15377: solute carrier family 44 (choline transporter-like protein), member 2/4/5
18 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.002G347900 GDP-fucose protein-O-fucosyltransferase 2, putative, expressed K03691: peptide-O-fucosyltransferase
20 Sobic.001G523700 erythronate-4-phosphate dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic005G017000 Sobic005G017000 Sobic008G078000 Sobic008G078000 Sobic005G017000--Sobic008G078000 Sobic008G174966 Sobic008G174966 Sobic005G017000--Sobic008G174966 Sobic009G167100 Sobic009G167100 Sobic005G017000--Sobic009G167100 Sobic009G061000 Sobic009G061000 Sobic005G017000--Sobic009G061000 Sobic001G023500 Sobic001G023500 Sobic005G017000--Sobic001G023500 Sobic004G118800 Sobic004G118800 Sobic005G017000--Sobic004G118800 Sobic001G154300 Sobic001G154300 Sobic005G017000--Sobic001G154300 Sobic005G064100 Sobic005G064100 Sobic005G017000--Sobic005G064100 Sobic008G101900 Sobic008G101900 Sobic005G017000--Sobic008G101900 Sobic001G465500 Sobic001G465500 Sobic008G078000--Sobic001G465500 Sobic008G078000--Sobic005G017000 Sobic003G331000 Sobic003G331000 Sobic008G078000--Sobic003G331000 Sobic003G343200 Sobic003G343200 Sobic008G078000--Sobic003G343200 Sobic005G160200 Sobic005G160200 Sobic008G078000--Sobic005G160200 Sobic002G123600 Sobic002G123600 Sobic008G078000--Sobic002G123600 Sobic008G078000--Sobic004G118800 Sobic010G222800 Sobic010G222800 Sobic008G078000--Sobic010G222800 Sobic002G239601 Sobic002G239601 Sobic008G078000--Sobic002G239601 Sobic001G196000 Sobic001G196000 Sobic008G174966--Sobic001G196000 Sobic006G071628 Sobic006G071628 Sobic008G174966--Sobic006G071628 Sobic008G174966--Sobic005G064100 Sobic010G090500 Sobic010G090500 Sobic008G174966--Sobic010G090500 Sobic007G173000 Sobic007G173000 Sobic008G174966--Sobic007G173000 Sobic008G174966--Sobic005G017000 Sobic006G267500 Sobic006G267500 Sobic008G174966--Sobic006G267500 Sobic008G174966--Sobic009G061000 Sobic008G174966--Sobic001G154300 Sobic010G250800 Sobic010G250800 Sobic009G167100--Sobic010G250800 Sobic009G167100--Sobic009G061000 Sobic006G257200 Sobic006G257200 Sobic009G167100--Sobic006G257200 Sobic001G385400 Sobic001G385400 Sobic009G167100--Sobic001G385400 Sobic008G015200 Sobic008G015200 Sobic009G167100--Sobic008G015200 Sobic002G320600 Sobic002G320600 Sobic009G167100--Sobic002G320600 Sobic003G027800 Sobic003G027800 Sobic009G167100--Sobic003G027800 Sobic009G052100 Sobic009G052100 Sobic009G167100--Sobic009G052100 Sobic008G192700 Sobic008G192700 Sobic009G167100--Sobic008G192700 Sobic009G061000--Sobic006G267500 Sobic009G073400 Sobic009G073400 Sobic009G061000--Sobic009G073400 Sobic001G437500 Sobic001G437500 Sobic009G061000--Sobic001G437500 Sobic002G276600 Sobic002G276600 Sobic009G061000--Sobic002G276600 Sobic001G159800 Sobic001G159800 Sobic009G061000--Sobic001G159800 Sobic009G061000--Sobic010G090500 Sobic009G206500 Sobic009G206500 Sobic009G061000--Sobic009G206500 Sobic009G061000--Sobic009G167100 Sobic001G051300 Sobic001G051300 Sobic009G061000--Sobic001G051300 Sobic004G328300 Sobic004G328300 Sobic001G023500--Sobic004G328300 Sobic001G023500--Sobic001G154300 Sobic001G201000 Sobic001G201000 Sobic001G023500--Sobic001G201000 Sobic005G055600 Sobic005G055600 Sobic001G023500--Sobic005G055600 Sobic010G231600 Sobic010G231600 Sobic001G023500--Sobic010G231600 Sobic001G023500--Sobic002G320600 Sobic003G045700 Sobic003G045700 Sobic001G023500--Sobic003G045700 Sobic003G031700 Sobic003G031700 Sobic001G023500--Sobic003G031700 Sobic001G285200 Sobic001G285200 Sobic001G023500--Sobic001G285200 Sobic001G371700 Sobic001G371700 Sobic004G118800--Sobic001G371700 Sobic004G118800--Sobic008G101900 Sobic002G001100 Sobic002G001100 Sobic004G118800--Sobic002G001100 Sobic008G038200 Sobic008G038200 Sobic004G118800--Sobic008G038200 Sobic003G177000 Sobic003G177000 Sobic004G118800--Sobic003G177000 Sobic004G118800--Sobic008G078000 Sobic004G118800--Sobic005G017000 Sobic001G298800 Sobic001G298800 Sobic004G118800--Sobic001G298800 Sobic002G425200 Sobic002G425200 Sobic004G118800--Sobic002G425200 Sobic001G381500 Sobic001G381500 Sobic001G154300--Sobic001G381500 Sobic001G154300--Sobic004G328300 Sobic001G361200 Sobic001G361200 Sobic001G154300--Sobic001G361200 Sobic001G154300--Sobic001G023500 Sobic002G192900 Sobic002G192900 Sobic001G154300--Sobic002G192900 Sobic004G306100 Sobic004G306100 Sobic001G154300--Sobic004G306100 Sobic001G248400 Sobic001G248400 Sobic001G154300--Sobic001G248400 Sobic002G308000 Sobic002G308000 Sobic001G154300--Sobic002G308000 Sobic006G127200 Sobic006G127200 Sobic001G154300--Sobic006G127200 Sobic003G298900 Sobic003G298900 Sobic005G064100--Sobic003G298900 Sobic005G064100--Sobic008G174966 Sobic001G507200 Sobic001G507200 Sobic005G064100--Sobic001G507200 Sobic005G064100--Sobic001G437500 Sobic003G409600 Sobic003G409600 Sobic005G064100--Sobic003G409600 Sobic004G093400 Sobic004G093400 Sobic005G064100--Sobic004G093400 Sobic005G064100--Sobic002G320600 Sobic005G064100--Sobic006G071628 Sobic005G064100--Sobic009G061000 Sobic006G274100 Sobic006G274100 Sobic008G101900--Sobic006G274100 Sobic008G058000 Sobic008G058000 Sobic008G101900--Sobic008G058000 Sobic003G223000 Sobic003G223000 Sobic008G101900--Sobic003G223000 Sobic006G193500 Sobic006G193500 Sobic008G101900--Sobic006G193500 Sobic008G101900--Sobic001G371700 Sobic001G395200 Sobic001G395200 Sobic008G101900--Sobic001G395200 Sobic001G199500 Sobic001G199500 Sobic008G101900--Sobic001G199500 Sobic002G272400 Sobic002G272400 Sobic008G101900--Sobic002G272400 Sobic004G354000 Sobic004G354000 Sobic008G101900--Sobic004G354000
Octagon: transcription factors


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