Gene annotation
Transcriptome id Sobic.006G238600.1
Synonym Sb06g030530
Functional annotation chloride channel protein, putative, expressed
UniProt C5Y913
Pfam PF00571 PF00654
Panther DB PTHR11689 PTHR11689:SF66
NCBI CDD -
KEGG Orthology K05016; chloride channel 7
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT5G33280 : Voltage-gated chloride channel family protein
RAP-DB (Rice) LOC_Os04g55210.1 : chloride channel protein, putative, expressed
MaizeGDB (Corn) Zm00025a023403 , Zm00025a009563
Brachypodium KQJ84929 , KQJ84928 , KQJ99905 , KQJ99904 , PNT61986 , PNT61985 , KQJ95977
Barley HORVU5Hr1G107380.3 , HORVU5Hr1G107380.2 , HORVU5Hr1G107380.1
Wheat TraesCS2A02G517500 , TraesCS2D02G519000 , TraesCS2D02G519000 , TraesCS2A02G517500 , TraesCS2A02G517500 , TraesCS5B02G457100 , TraesCS2B02G546000 , TraesCS2B02G546000 , TraesCS5A02G449500
Populus -


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cDNA sequences
Sobic.006G238600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase APK1B, chloroplast precursor, putative, expressed -
2 Sobic.008G141400 expressed protein -
3 Sobic.002G236500 OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed -
4 Sobic.009G254200 pentatricopeptide, putative, expressed -
5 Sobic.001G190400 endonuclease/Exonuclease/phosphatase family protein, expressed -
6 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
7 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
8 Sobic.004G356200 expressed protein -
9 Sobic.008G078000 EDM2, putative, expressed -
10 Sobic.004G140300 delta14-sterol reductase, putative, expressed K00213: 7-dehydrocholesterol reductase
11 Sobic.001G300000 - -
12 Sobic.002G155000 EMB1381, putative, expressed -
13 Sobic.006G280100 SET domain containing protein, expressed -
14 Sobic.003G177000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
15 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
16 Sobic.006G273900 expressed protein -
17 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
18 Sobic.009G020100 hydrolase, NUDIX family, domain containing protein, expressed -
19 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
20 Sobic.010G066400 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G238600 Sobic006G238600 Sobic005G017000 Sobic005G017000 Sobic006G238600--Sobic005G017000 Sobic008G141400 Sobic008G141400 Sobic006G238600--Sobic008G141400 Sobic002G236500 Sobic002G236500 Sobic006G238600--Sobic002G236500 Sobic009G254200 Sobic009G254200 Sobic006G238600--Sobic009G254200 Sobic001G190400 Sobic001G190400 Sobic006G238600--Sobic001G190400 Sobic001G502600 Sobic001G502600 Sobic006G238600--Sobic001G502600 Sobic002G264300 Sobic002G264300 Sobic006G238600--Sobic002G264300 Sobic004G356200 Sobic004G356200 Sobic006G238600--Sobic004G356200 Sobic008G078000 Sobic008G078000 Sobic006G238600--Sobic008G078000 Sobic005G017000--Sobic008G078000 Sobic008G174966 Sobic008G174966 Sobic005G017000--Sobic008G174966 Sobic009G167100 Sobic009G167100 Sobic005G017000--Sobic009G167100 Sobic009G061000 Sobic009G061000 Sobic005G017000--Sobic009G061000 Sobic001G023500 Sobic001G023500 Sobic005G017000--Sobic001G023500 Sobic004G118800 Sobic004G118800 Sobic005G017000--Sobic004G118800 Sobic001G154300 Sobic001G154300 Sobic005G017000--Sobic001G154300 Sobic005G064100 Sobic005G064100 Sobic005G017000--Sobic005G064100 Sobic008G101900 Sobic008G101900 Sobic005G017000--Sobic008G101900 Sobic008G141400--Sobic006G238600 Sobic008G141400--Sobic009G254200 Sobic002G343200 Sobic002G343200 Sobic008G141400--Sobic002G343200 Sobic002G386600 Sobic002G386600 Sobic008G141400--Sobic002G386600 Sobic002G428800 Sobic002G428800 Sobic008G141400--Sobic002G428800 Sobic004G030400 Sobic004G030400 Sobic008G141400--Sobic004G030400 Sobic003G134000 Sobic003G134000 Sobic008G141400--Sobic003G134000 Sobic004G172500 Sobic004G172500 Sobic008G141400--Sobic004G172500 Sobic008G141400--Sobic004G356200 Sobic003G388000 Sobic003G388000 Sobic002G236500--Sobic003G388000 Sobic002G128101 Sobic002G128101 Sobic002G236500--Sobic002G128101 Sobic003G396700 Sobic003G396700 Sobic002G236500--Sobic003G396700 Sobic002G237800 Sobic002G237800 Sobic002G236500--Sobic002G237800 Sobic001G200200 Sobic001G200200 Sobic002G236500--Sobic001G200200 Sobic001G273000 Sobic001G273000 Sobic002G236500--Sobic001G273000 Sobic005G008600 Sobic005G008600 Sobic002G236500--Sobic005G008600 Sobic002G236500--Sobic004G030400 Sobic005G150600 Sobic005G150600 Sobic002G236500--Sobic005G150600 Sobic009G254200--Sobic001G502600 Sobic002G031700 Sobic002G031700 Sobic009G254200--Sobic002G031700 Sobic002G142066 Sobic002G142066 Sobic009G254200--Sobic002G142066 Sobic003G208300 Sobic003G208300 Sobic009G254200--Sobic003G208300 Sobic001G161400 Sobic001G161400 Sobic009G254200--Sobic001G161400 Sobic002G404200 Sobic002G404200 Sobic009G254200--Sobic002G404200 Sobic001G341800 Sobic001G341800 Sobic009G254200--Sobic001G341800 Sobic009G254200--Sobic008G141400 Sobic001G367500 Sobic001G367500 Sobic009G254200--Sobic001G367500 Sobic002G155000 Sobic002G155000 Sobic001G190400--Sobic002G155000 Sobic001G190400--Sobic002G031700 Sobic001G190400--Sobic001G502600 Sobic010G204900 Sobic010G204900 Sobic001G190400--Sobic010G204900 Sobic002G122100 Sobic002G122100 Sobic001G190400--Sobic002G122100 Sobic010G130300 Sobic010G130300 Sobic001G190400--Sobic010G130300 Sobic001G025800 Sobic001G025800 Sobic001G190400--Sobic001G025800 Sobic004G351800 Sobic004G351800 Sobic001G190400--Sobic004G351800 Sobic007G075800 Sobic007G075800 Sobic001G190400--Sobic007G075800 Sobic001G008000 Sobic001G008000 Sobic001G502600--Sobic001G008000 Sobic004G305100 Sobic004G305100 Sobic001G502600--Sobic004G305100 Sobic010G041000 Sobic010G041000 Sobic001G502600--Sobic010G041000 Sobic006G273900 Sobic006G273900 Sobic001G502600--Sobic006G273900 Sobic005G100900 Sobic005G100900 Sobic001G502600--Sobic005G100900 Sobic003G209400 Sobic003G209400 Sobic001G502600--Sobic003G209400 Sobic001G502600--Sobic002G155000 Sobic003G332900 Sobic003G332900 Sobic001G502600--Sobic003G332900 Sobic001G502600--Sobic001G190400 Sobic001G115500 Sobic001G115500 Sobic002G264300--Sobic001G115500 Sobic010G073500 Sobic010G073500 Sobic002G264300--Sobic010G073500 Sobic002G126800 Sobic002G126800 Sobic002G264300--Sobic002G126800 Sobic009G151800 Sobic009G151800 Sobic002G264300--Sobic009G151800 Sobic001G373000 Sobic001G373000 Sobic002G264300--Sobic001G373000 Sobic001G008500 Sobic001G008500 Sobic002G264300--Sobic001G008500 Sobic002G264300--Sobic004G030400 Sobic006G071628 Sobic006G071628 Sobic002G264300--Sobic006G071628 Sobic004G075200 Sobic004G075200 Sobic002G264300--Sobic004G075200 Sobic004G356200--Sobic001G200200 Sobic002G371600 Sobic002G371600 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic002G160700 Sobic002G160700 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic001G465500 Sobic001G465500 Sobic008G078000--Sobic001G465500 Sobic008G078000--Sobic005G017000 Sobic003G331000 Sobic003G331000 Sobic008G078000--Sobic003G331000 Sobic003G343200 Sobic003G343200 Sobic008G078000--Sobic003G343200 Sobic005G160200 Sobic005G160200 Sobic008G078000--Sobic005G160200 Sobic002G123600 Sobic002G123600 Sobic008G078000--Sobic002G123600 Sobic008G078000--Sobic004G118800 Sobic010G222800 Sobic010G222800 Sobic008G078000--Sobic010G222800 Sobic002G239601 Sobic002G239601 Sobic008G078000--Sobic002G239601
Octagon: transcription factors


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