Gene annotation
Transcriptome id Sobic.009G201900.1
Synonym Sb09g025940
Functional annotation peptidyl-tRNA hydrolase, putative, expressed
UniProt C5Z1B8
Pfam PF01981
Panther DB PTHR12649 PTHR12649:SF12
NCBI CDD KOG3282; Uncharacterized conserved protein
KEGG Orthology K04794; peptidyl-tRNA hydrolase, PTH2 family
Gene Ontology GO:0004045; aminoacyl-tRNA hydrolase activity


Orthologs (automatic annotation)
TAIR AT4G32900 : Peptidyl-tRNA hydrolase II (PTH2) family protein
RAP-DB (Rice) LOC_Os05g44390.1 : peptidyl-tRNA hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a037971
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G231100 3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed K00979: 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase)
2 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
3 Sobic.002G078000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KHG/KDPG aldolase, putative, expressed -
4 Sobic.004G070800 tic21, putative, expressed -
5 Sobic.010G134500 exonuclease, putative, expressed -
6 Sobic.005G022000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
7 Sobic.002G317600 endoribonuclease, putative, expressed -
8 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
10 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
11 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
12 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
13 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
14 Sobic.001G371700 zinc finger protein, putative, expressed -
15 Sobic.002G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
17 Sobic.010G059200 cystathionine gamma-synthase, putative, expressed K01760: cysteine-S-conjugate beta-lyase
18 Sobic.007G172600 dihydroneopterin aldolase, putative, expressed K01633: 7,8-dihydroneopterin aldolase/epimerase/oxygenase
19 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
20 Sobic.003G383500 rhodanese-like, putative, expressed -


Gene co-expression network
sample Sobic009G201900 Sobic009G201900 Sobic009G231100 Sobic009G231100 Sobic009G201900--Sobic009G231100 Sobic003G420900 Sobic003G420900 Sobic009G201900--Sobic003G420900 Sobic002G078000 Sobic002G078000 Sobic009G201900--Sobic002G078000 Sobic004G070800 Sobic004G070800 Sobic009G201900--Sobic004G070800 Sobic010G134500 Sobic010G134500 Sobic009G201900--Sobic010G134500 Sobic005G022000 Sobic005G022000 Sobic009G201900--Sobic005G022000 Sobic002G317600 Sobic002G317600 Sobic009G201900--Sobic002G317600 Sobic003G223000 Sobic003G223000 Sobic009G201900--Sobic003G223000 Sobic007G026200 Sobic007G026200 Sobic009G201900--Sobic007G026200 Sobic009G231100--Sobic009G201900 Sobic002G225000 Sobic002G225000 Sobic009G231100--Sobic002G225000 Sobic002G377300 Sobic002G377300 Sobic009G231100--Sobic002G377300 Sobic001G518200 Sobic001G518200 Sobic009G231100--Sobic001G518200 Sobic009G231100--Sobic003G420900 Sobic009G231100--Sobic003G223000 Sobic005G031000 Sobic005G031000 Sobic009G231100--Sobic005G031000 Sobic001G104300 Sobic001G104300 Sobic009G231100--Sobic001G104300 Sobic009G231100--Sobic005G022000 Sobic001G376700 Sobic001G376700 Sobic003G420900--Sobic001G376700 Sobic004G296800 Sobic004G296800 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic001G543700 Sobic001G543700 Sobic003G420900--Sobic001G543700 Sobic001G013900 Sobic001G013900 Sobic002G078000--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic002G078000--Sobic003G333700 Sobic002G078000--Sobic001G104300 Sobic002G078000--Sobic005G022000 Sobic002G078000--Sobic003G223000 Sobic002G360200 Sobic002G360200 Sobic002G078000--Sobic002G360200 Sobic001G188600 Sobic001G188600 Sobic002G078000--Sobic001G188600 Sobic010G012900 Sobic010G012900 Sobic002G078000--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic002G078000--Sobic004G109000 Sobic003G383500 Sobic003G383500 Sobic004G070800--Sobic003G383500 Sobic007G013400 Sobic007G013400 Sobic004G070800--Sobic007G013400 Sobic004G070800--Sobic004G109000 Sobic004G015700 Sobic004G015700 Sobic004G070800--Sobic004G015700 Sobic001G357200 Sobic001G357200 Sobic004G070800--Sobic001G357200 Sobic004G070800--Sobic003G261200 Sobic004G070800--Sobic001G104300 Sobic007G211100 Sobic007G211100 Sobic004G070800--Sobic007G211100 Sobic006G114300 Sobic006G114300 Sobic004G070800--Sobic006G114300 Sobic009G210100 Sobic009G210100 Sobic010G134500--Sobic009G210100 Sobic010G134500--Sobic001G104300 Sobic010G134500--Sobic002G078000 Sobic007G070000 Sobic007G070000 Sobic010G134500--Sobic007G070000 Sobic003G267500 Sobic003G267500 Sobic010G134500--Sobic003G267500 Sobic010G134500--Sobic003G420900 Sobic010G134500--Sobic005G022000 Sobic002G363500 Sobic002G363500 Sobic010G134500--Sobic002G363500 Sobic001G161400 Sobic001G161400 Sobic010G134500--Sobic001G161400 Sobic005G022000--Sobic002G078000 Sobic005G022000--Sobic001G104300 Sobic005G022000--Sobic002G363500 Sobic006G281066 Sobic006G281066 Sobic005G022000--Sobic006G281066 Sobic005G022000--Sobic006G114300 Sobic005G022000--Sobic007G026200 Sobic005G022000--Sobic002G360200 Sobic007G166600 Sobic007G166600 Sobic005G022000--Sobic007G166600 Sobic001G389500 Sobic001G389500 Sobic005G022000--Sobic001G389500 Sobic001G436300 Sobic001G436300 Sobic002G317600--Sobic001G436300 Sobic008G075200 Sobic008G075200 Sobic002G317600--Sobic008G075200 Sobic008G059900 Sobic008G059900 Sobic002G317600--Sobic008G059900 Sobic007G079600 Sobic007G079600 Sobic002G317600--Sobic007G079600 Sobic007G172600 Sobic007G172600 Sobic002G317600--Sobic007G172600 Sobic003G248300 Sobic003G248300 Sobic002G317600--Sobic003G248300 Sobic001G235700 Sobic001G235700 Sobic002G317600--Sobic001G235700 Sobic008G181400 Sobic008G181400 Sobic002G317600--Sobic008G181400 Sobic001G176900 Sobic001G176900 Sobic002G317600--Sobic001G176900 Sobic003G223000--Sobic003G333700 Sobic003G223000--Sobic002G078000 Sobic008G101900 Sobic008G101900 Sobic003G223000--Sobic008G101900 Sobic009G002900 Sobic009G002900 Sobic003G223000--Sobic009G002900 Sobic009G177200 Sobic009G177200 Sobic003G223000--Sobic009G177200 Sobic003G223000--Sobic009G231100 Sobic001G165801 Sobic001G165801 Sobic003G223000--Sobic001G165801 Sobic003G223000--Sobic001G104300 Sobic002G272400 Sobic002G272400 Sobic003G223000--Sobic002G272400 Sobic001G069500 Sobic001G069500 Sobic007G026200--Sobic001G069500 Sobic007G026200--Sobic007G211100 Sobic007G026200--Sobic001G188600 Sobic007G026200--Sobic004G109000 Sobic002G189600 Sobic002G189600 Sobic007G026200--Sobic002G189600 Sobic007G026200--Sobic006G281066 Sobic007G026200--Sobic010G012900 Sobic007G026200--Sobic001G357200 Sobic007G026200--Sobic004G296800
Octagon: transcription factors


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