Gene annotation
Transcriptome id Sobic.003G124600.1
Synonym EMB2733, Sb03g010540, ESP3
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt C5XGK1
Pfam PF00271 PF04408 PF07717
Panther DB PTHR18934 PTHR18934:SF117
NCBI CDD -
KEGG Orthology K12813; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
Gene Ontology GO:0004386; helicase activity


Orthologs (automatic annotation)
TAIR AT1G32490 : RNA helicase family protein
RAP-DB (Rice) LOC_Os08g24760.1 : ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a030589
Brachypodium KQK21508
Barley HORVU4Hr1G088270.28 , HORVU4Hr1G088270.29 , HORVU4Hr1G088270.20 , HORVU4Hr1G088270.21 , HORVU4Hr1G088270.22 , HORVU4Hr1G088270.23 , HORVU4Hr1G088270.24 , HORVU4Hr1G088270.25 , HORVU4Hr1G088270.26 , HORVU4Hr1G088270.27 , HORVU4Hr1G088270.19 , HORVU4Hr1G088270.18 , HORVU4Hr1G088270.15 , HORVU4Hr1G088270.14 , HORVU4Hr1G088270.17 , HORVU4Hr1G088270.16 , HORVU4Hr1G088270.11 , HORVU4Hr1G088270.10 , HORVU4Hr1G088270.13 , HORVU4Hr1G088270.12 , HORVU4Hr1G088270.9 , HORVU4Hr1G088270.8 , HORVU4Hr1G088270.1 , HORVU4Hr1G088270.3 , HORVU4Hr1G088270.2 , HORVU4Hr1G088270.5 , HORVU4Hr1G088270.4 , HORVU4Hr1G088270.7 , HORVU4Hr1G088270.6
Wheat TraesCS4D02G362600 , TraesCS4B02G374800
Populus -


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cDNA sequences
Sobic.003G124600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
2 Sobic.006G170900 growth regulator related protein, putative, expressed -
3 Sobic.002G292800 MORN repeat domain containing protein, expressed -
4 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
5 Sobic.003G299500 expressed protein -
6 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
7 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
8 Sobic.003G113300 expressed protein -
9 Sobic.001G424600 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
10 Sobic.008G080500 expressed protein -
11 Sobic.003G067201 - -
12 Sobic.001G482200 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
13 Sobic.004G097900 expressed protein -
14 Sobic.002G063900 zinc ion binding protein, putative, expressed -
15 Sobic.002G263700 bromodomain protein 103, putative, expressed -
16 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
17 Sobic.004G106250 - -
18 Sobic.002G235900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
19 Sobic.006G280100 SET domain containing protein, expressed -
20 Sobic.004G141800 expressed protein -


Gene co-expression network
sample Sobic003G124600 Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G124600--Sobic002G079100 Sobic006G170900 Sobic006G170900 Sobic003G124600--Sobic006G170900 Sobic002G292800 Sobic002G292800 Sobic003G124600--Sobic002G292800 Sobic003G016500 Sobic003G016500 Sobic003G124600--Sobic003G016500 Sobic003G299500 Sobic003G299500 Sobic003G124600--Sobic003G299500 Sobic007G034200 Sobic007G034200 Sobic003G124600--Sobic007G034200 Sobic009G102000 Sobic009G102000 Sobic003G124600--Sobic009G102000 Sobic003G113300 Sobic003G113300 Sobic003G124600--Sobic003G113300 Sobic001G424600 Sobic001G424600 Sobic003G124600--Sobic001G424600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic008G080500 Sobic008G080500 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic005G123400 Sobic005G123400 Sobic006G170900--Sobic005G123400 Sobic006G170900--Sobic003G124600 Sobic006G170900--Sobic003G113300 Sobic006G170900--Sobic007G034200 Sobic006G103700 Sobic006G103700 Sobic006G170900--Sobic006G103700 Sobic006G170900--Sobic002G292800 Sobic003G194800 Sobic003G194800 Sobic006G170900--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic006G170900--Sobic004G106250 Sobic006G237500 Sobic006G237500 Sobic006G170900--Sobic006G237500 Sobic004G097900 Sobic004G097900 Sobic002G292800--Sobic004G097900 Sobic002G292800--Sobic006G245900 Sobic002G292800--Sobic002G079100 Sobic002G386900 Sobic002G386900 Sobic002G292800--Sobic002G386900 Sobic006G191200 Sobic006G191200 Sobic002G292800--Sobic006G191200 Sobic002G063900 Sobic002G063900 Sobic002G292800--Sobic002G063900 Sobic002G292800--Sobic003G124600 Sobic002G292800--Sobic006G170900 Sobic001G495400 Sobic001G495400 Sobic002G292800--Sobic001G495400 Sobic010G070600 Sobic010G070600 Sobic003G016500--Sobic010G070600 Sobic003G016500--Sobic003G299500 Sobic008G092800 Sobic008G092800 Sobic003G016500--Sobic008G092800 Sobic003G016500--Sobic008G080500 Sobic002G119600 Sobic002G119600 Sobic003G016500--Sobic002G119600 Sobic003G016500--Sobic007G034200 Sobic003G016500--Sobic003G124600 Sobic003G016500--Sobic004G106250 Sobic008G140700 Sobic008G140700 Sobic003G016500--Sobic008G140700 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic003G299500--Sobic004G106250 Sobic009G120400 Sobic009G120400 Sobic003G299500--Sobic009G120400 Sobic003G299500--Sobic003G016500 Sobic001G123600 Sobic001G123600 Sobic003G299500--Sobic001G123600 Sobic003G299500--Sobic006G245900 Sobic002G235900 Sobic002G235900 Sobic003G299500--Sobic002G235900 Sobic003G299500--Sobic006G191200 Sobic007G034200--Sobic003G299500 Sobic007G034200--Sobic009G120400 Sobic001G051400 Sobic001G051400 Sobic007G034200--Sobic001G051400 Sobic007G034200--Sobic001G123600 Sobic007G034200--Sobic003G194800 Sobic007G034200--Sobic002G386900 Sobic007G034200--Sobic006G191200 Sobic007G034200--Sobic003G113300 Sobic007G034200--Sobic006G170900 Sobic008G149800 Sobic008G149800 Sobic009G102000--Sobic008G149800 Sobic002G317400 Sobic002G317400 Sobic009G102000--Sobic002G317400 Sobic009G040800 Sobic009G040800 Sobic009G102000--Sobic009G040800 Sobic004G122900 Sobic004G122900 Sobic009G102000--Sobic004G122900 Sobic002G147100 Sobic002G147100 Sobic009G102000--Sobic002G147100 Sobic009G102000--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic009G102000--Sobic009G129600 Sobic007G147400 Sobic007G147400 Sobic009G102000--Sobic007G147400 Sobic009G102000--Sobic003G299500 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic002G296400 Sobic002G296400 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic001G474400 Sobic001G474400 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic005G114500 Sobic005G114500 Sobic003G113300--Sobic005G114500 Sobic007G030100 Sobic007G030100 Sobic003G113300--Sobic007G030100 Sobic003G393200 Sobic003G393200 Sobic003G113300--Sobic003G393200 Sobic003G113300--Sobic001G051400 Sobic004G049700 Sobic004G049700 Sobic001G424600--Sobic004G049700 Sobic009G151200 Sobic009G151200 Sobic001G424600--Sobic009G151200 Sobic001G424600--Sobic002G063900 Sobic006G116100 Sobic006G116100 Sobic001G424600--Sobic006G116100 Sobic002G423200 Sobic002G423200 Sobic001G424600--Sobic002G423200 Sobic002G278000 Sobic002G278000 Sobic001G424600--Sobic002G278000 Sobic003G160000 Sobic003G160000 Sobic001G424600--Sobic003G160000 Sobic008G058800 Sobic008G058800 Sobic001G424600--Sobic008G058800 Sobic002G357700 Sobic002G357700 Sobic001G424600--Sobic002G357700
Octagon: transcription factors


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