Gene annotation
Transcriptome id Sobic.001G482200.4,Sobic.001G482200.3,Sobic.001G482200.1
Synonym FRS5, Sb01g045140
Functional annotation FAR1 family protein, expressed
UniProt A0A1B6QQ71 , A0A1B6QQ46
Pfam PF04434 PF00320 PF10551 PF03101
Panther DB PTHR31669 PTHR31669:SF3
NCBI CDD -
KEGG Orthology K17604; zinc finger SWIM domain-containing protein 3
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G38180 : FAR1-related sequence 5
RAP-DB (Rice) LOC_Os03g08370.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU4Hr1G077050.13 , HORVU4Hr1G042050.3 , HORVU4Hr1G042050.2 , HORVU4Hr1G077050.9 , HORVU4Hr1G077050.8 , HORVU4Hr1G077050.3 , HORVU4Hr1G077050.1 , HORVU4Hr1G077050.7 , HORVU4Hr1G077050.6 , HORVU4Hr1G077050.5 , HORVU4Hr1G077050.12 , HORVU4Hr1G077050.11 , HORVU4Hr1G077050.10 , HORVU4Hr1G077050.14 , HORVU4Hr1G077050.2 , HORVU4Hr1G077050.4 , HORVU3Hr1G025320.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G482200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
2 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
3 Sobic.006G280100 SET domain containing protein, expressed -
4 Sobic.009G107080 - -
5 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
6 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
7 Sobic.008G080500 expressed protein -
8 Sobic.010G138900 cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed K11991: tRNA(adenine34) deaminase
9 Sobic.008G088842 - -
10 Sobic.006G245900 FAR1 family protein, expressed -
11 Sobic.003G299500 expressed protein -
12 Sobic.007G094500 KH domain containing protein, putative, expressed -
13 Sobic.002G356600 ZCW7, putative, expressed -
14 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
15 Sobic.010G262100 expressed protein -
16 Sobic.006G112700 ATPOT1, putative, expressed -
17 Sobic.009G101000 - -
18 Sobic.004G106250 - -
19 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
20 Sobic.010G227000 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic001G482200 Sobic001G482200 Sobic002G079100 Sobic002G079100 Sobic001G482200--Sobic002G079100 Sobic002G148400 Sobic002G148400 Sobic001G482200--Sobic002G148400 Sobic006G280100 Sobic006G280100 Sobic001G482200--Sobic006G280100 Sobic009G107080 Sobic009G107080 Sobic001G482200--Sobic009G107080 Sobic002G380100 Sobic002G380100 Sobic001G482200--Sobic002G380100 Sobic003G124600 Sobic003G124600 Sobic001G482200--Sobic003G124600 Sobic008G080500 Sobic008G080500 Sobic001G482200--Sobic008G080500 Sobic010G138900 Sobic010G138900 Sobic001G482200--Sobic010G138900 Sobic008G088842 Sobic008G088842 Sobic001G482200--Sobic008G088842 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic002G079100--Sobic008G080500 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic002G079100--Sobic001G482200 Sobic004G049700 Sobic004G049700 Sobic002G148400--Sobic004G049700 Sobic009G129600 Sobic009G129600 Sobic002G148400--Sobic009G129600 Sobic008G057000 Sobic008G057000 Sobic002G148400--Sobic008G057000 Sobic001G484200 Sobic001G484200 Sobic002G148400--Sobic001G484200 Sobic001G134300 Sobic001G134300 Sobic002G148400--Sobic001G134300 Sobic004G156500 Sobic004G156500 Sobic002G148400--Sobic004G156500 Sobic002G357100 Sobic002G357100 Sobic002G148400--Sobic002G357100 Sobic004G086200 Sobic004G086200 Sobic002G148400--Sobic004G086200 Sobic001G346700 Sobic001G346700 Sobic002G148400--Sobic001G346700 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic006G280100--Sobic002G079100 Sobic006G280100--Sobic008G080500 Sobic009G107080--Sobic001G482200 Sobic001G258900 Sobic001G258900 Sobic009G107080--Sobic001G258900 Sobic009G107080--Sobic002G148400 Sobic002G162500 Sobic002G162500 Sobic009G107080--Sobic002G162500 Sobic004G135900 Sobic004G135900 Sobic009G107080--Sobic004G135900 Sobic009G101000 Sobic009G101000 Sobic009G107080--Sobic009G101000 Sobic006G063001 Sobic006G063001 Sobic009G107080--Sobic006G063001 Sobic003G312700 Sobic003G312700 Sobic009G107080--Sobic003G312700 Sobic002G340200 Sobic002G340200 Sobic009G107080--Sobic002G340200 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic009G096100 Sobic009G096100 Sobic002G380100--Sobic009G096100 Sobic003G124600--Sobic002G079100 Sobic006G170900 Sobic006G170900 Sobic003G124600--Sobic006G170900 Sobic003G124600--Sobic002G292800 Sobic003G016500 Sobic003G016500 Sobic003G124600--Sobic003G016500 Sobic003G299500 Sobic003G299500 Sobic003G124600--Sobic003G299500 Sobic007G034200 Sobic007G034200 Sobic003G124600--Sobic007G034200 Sobic009G102000 Sobic009G102000 Sobic003G124600--Sobic009G102000 Sobic003G113300 Sobic003G113300 Sobic003G124600--Sobic003G113300 Sobic001G424600 Sobic001G424600 Sobic003G124600--Sobic001G424600 Sobic008G080500--Sobic007G159200 Sobic010G262100 Sobic010G262100 Sobic008G080500--Sobic010G262100 Sobic004G355800 Sobic004G355800 Sobic008G080500--Sobic004G355800 Sobic006G112700 Sobic006G112700 Sobic008G080500--Sobic006G112700 Sobic008G080500--Sobic002G079100 Sobic005G200900 Sobic005G200900 Sobic008G080500--Sobic005G200900 Sobic010G269300 Sobic010G269300 Sobic008G080500--Sobic010G269300 Sobic008G080500--Sobic003G299500 Sobic002G235900 Sobic002G235900 Sobic008G080500--Sobic002G235900 Sobic010G138900--Sobic008G088842 Sobic010G138900--Sobic010G262100 Sobic001G451300 Sobic001G451300 Sobic010G138900--Sobic001G451300 Sobic009G142000 Sobic009G142000 Sobic010G138900--Sobic009G142000 Sobic001G453000 Sobic001G453000 Sobic010G138900--Sobic001G453000 Sobic003G435500 Sobic003G435500 Sobic010G138900--Sobic003G435500 Sobic003G250900 Sobic003G250900 Sobic010G138900--Sobic003G250900 Sobic004G034700 Sobic004G034700 Sobic010G138900--Sobic004G034700 Sobic002G043100 Sobic002G043100 Sobic010G138900--Sobic002G043100 Sobic008G088842--Sobic010G138900 Sobic006G140600 Sobic006G140600 Sobic008G088842--Sobic006G140600 Sobic002G143200 Sobic002G143200 Sobic008G088842--Sobic002G143200 Sobic008G088842--Sobic010G262100 Sobic003G311600 Sobic003G311600 Sobic008G088842--Sobic003G311600 Sobic008G088842--Sobic001G451300 Sobic008G088842--Sobic006G280100 Sobic006G208400 Sobic006G208400 Sobic008G088842--Sobic006G208400 Sobic008G088842--Sobic002G340200
Octagon: transcription factors


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