Gene annotation
Transcriptome id Sobic.001G423300.1
Synonym TOC75-III, MAR1, Sb01g039800
Functional annotation outer membrane protein, OMP85 family, putative, expressed
UniProt C5WQ18
Pfam PF01103
Panther DB PTHR12815 PTHR12815:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G46740 : translocon at the outer envelope membrane of chloroplasts 75-III
RAP-DB (Rice) LOC_Os03g16440.1 : outer membrane protein, OMP85 family, putative, expressed
MaizeGDB (Corn) Zm00025a052771 , Zm00025a001802
Brachypodium KQK22363
Barley HORVU4Hr1G060190.2 , HORVU4Hr1G060190.3 , HORVU4Hr1G060190.1 , HORVU4Hr1G060190.6 , HORVU4Hr1G060190.4 , HORVU4Hr1G060190.5
Wheat TraesCS4D02G209900 , TraesCS4A02G095300 , TraesCS4B02G209200
Populus -


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cDNA sequences
Sobic.001G423300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49
2 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
3 Sobic.001G462401 - -
4 Sobic.009G254000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
5 Sobic.010G207400 protein kinase domain containing protein, expressed -
6 Sobic.004G155800 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01652: E2.2.1.6L, ilvB, ilvG, acetolactate synthase I/II/III large subunit
7 Sobic.008G179800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
8 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
9 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
10 Sobic.006G140300 expressed protein -
11 Sobic.009G257500 expressed protein -
12 Sobic.003G217500 expressed protein -
13 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
14 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
15 Sobic.005G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase
16 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
17 Sobic.006G232400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aluminum resistance protein, putative, expressed -
18 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
19 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
20 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP


Gene co-expression network
sample Sobic001G423300 Sobic001G423300 Sobic005G187400 Sobic005G187400 Sobic001G423300--Sobic005G187400 Sobic009G113100 Sobic009G113100 Sobic001G423300--Sobic009G113100 Sobic001G462401 Sobic001G462401 Sobic001G423300--Sobic001G462401 Sobic009G254000 Sobic009G254000 Sobic001G423300--Sobic009G254000 Sobic010G207400 Sobic010G207400 Sobic001G423300--Sobic010G207400 Sobic004G155800 Sobic004G155800 Sobic001G423300--Sobic004G155800 Sobic008G179800 Sobic008G179800 Sobic001G423300--Sobic008G179800 Sobic006G061100 Sobic006G061100 Sobic001G423300--Sobic006G061100 Sobic004G075700 Sobic004G075700 Sobic001G423300--Sobic004G075700 Sobic005G187400--Sobic001G423300 Sobic005G187400--Sobic009G113100 Sobic001G373000 Sobic001G373000 Sobic005G187400--Sobic001G373000 Sobic002G005000 Sobic002G005000 Sobic005G187400--Sobic002G005000 Sobic001G230500 Sobic001G230500 Sobic005G187400--Sobic001G230500 Sobic004G067400 Sobic004G067400 Sobic005G187400--Sobic004G067400 Sobic003G161800 Sobic003G161800 Sobic005G187400--Sobic003G161800 Sobic001G334100 Sobic001G334100 Sobic005G187400--Sobic001G334100 Sobic001G115500 Sobic001G115500 Sobic005G187400--Sobic001G115500 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic009G113100--Sobic006G061100 Sobic001G462401--Sobic001G423300 Sobic009G013400 Sobic009G013400 Sobic001G462401--Sobic009G013400 Sobic001G462401--Sobic008G179800 Sobic001G324800 Sobic001G324800 Sobic001G462401--Sobic001G324800 Sobic003G153500 Sobic003G153500 Sobic001G462401--Sobic003G153500 Sobic003G217500 Sobic003G217500 Sobic001G462401--Sobic003G217500 Sobic001G462401--Sobic010G207400 Sobic004G038900 Sobic004G038900 Sobic001G462401--Sobic004G038900 Sobic005G032400 Sobic005G032400 Sobic001G462401--Sobic005G032400 Sobic006G140300 Sobic006G140300 Sobic009G254000--Sobic006G140300 Sobic007G197100 Sobic007G197100 Sobic009G254000--Sobic007G197100 Sobic003G298900 Sobic003G298900 Sobic009G254000--Sobic003G298900 Sobic002G366000 Sobic002G366000 Sobic009G254000--Sobic002G366000 Sobic001G540700 Sobic001G540700 Sobic009G254000--Sobic001G540700 Sobic003G224700 Sobic003G224700 Sobic009G254000--Sobic003G224700 Sobic002G006100 Sobic002G006100 Sobic009G254000--Sobic002G006100 Sobic004G250600 Sobic004G250600 Sobic009G254000--Sobic004G250600 Sobic005G013300 Sobic005G013300 Sobic009G254000--Sobic005G013300 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic004G155800--Sobic001G423300 Sobic001G480550 Sobic001G480550 Sobic004G155800--Sobic001G480550 Sobic005G072400 Sobic005G072400 Sobic004G155800--Sobic005G072400 Sobic001G130700 Sobic001G130700 Sobic004G155800--Sobic001G130700 Sobic004G155800--Sobic005G187400 Sobic005G046900 Sobic005G046900 Sobic004G155800--Sobic005G046900 Sobic003G022200 Sobic003G022200 Sobic004G155800--Sobic003G022200 Sobic010G270800 Sobic010G270800 Sobic004G155800--Sobic010G270800 Sobic009G257500 Sobic009G257500 Sobic004G155800--Sobic009G257500 Sobic008G179800--Sobic010G207400 Sobic004G196800 Sobic004G196800 Sobic008G179800--Sobic004G196800 Sobic008G179800--Sobic004G250600 Sobic010G118200 Sobic010G118200 Sobic008G179800--Sobic010G118200 Sobic007G023600 Sobic007G023600 Sobic008G179800--Sobic007G023600 Sobic001G170500 Sobic001G170500 Sobic008G179800--Sobic001G170500 Sobic008G156200 Sobic008G156200 Sobic008G179800--Sobic008G156200 Sobic009G253800 Sobic009G253800 Sobic008G179800--Sobic009G253800 Sobic008G179800--Sobic004G038900 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650 Sobic006G186300 Sobic006G186300 Sobic004G075700--Sobic006G186300 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic001G305100 Sobic001G305100 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic004G075700--Sobic003G026900 Sobic004G075700--Sobic006G061100 Sobic006G161300 Sobic006G161300 Sobic004G075700--Sobic006G161300 Sobic005G131800 Sobic005G131800 Sobic004G075700--Sobic005G131800
Octagon: transcription factors


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