Gene annotation
Transcriptome id Sobic.001G462401.1
Synonym -
Functional annotation -
UniProt A0A1Z5SAT3
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF263
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02420 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g11020.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a001104
Brachypodium KQK23003
Barley HORVU0Hr1G008990.12 , HORVU0Hr1G008990.13 , HORVU0Hr1G008990.18 , HORVU0Hr1G008990.19 , HORVU0Hr1G008990.24 , HORVU0Hr1G008990.23 , HORVU0Hr1G008990.22 , HORVU0Hr1G008990.21 , HORVU0Hr1G008990.20 , HORVU0Hr1G008990.4 , HORVU0Hr1G008990.5 , HORVU0Hr1G008990.6 , HORVU0Hr1G008990.7 , HORVU0Hr1G008990.1 , HORVU0Hr1G008990.2 , HORVU0Hr1G008990.3 , HORVU0Hr1G008990.8 , HORVU0Hr1G008990.9 , HORVU0Hr1G008990.16 , HORVU0Hr1G008990.17 , HORVU0Hr1G008990.14 , HORVU0Hr1G008990.15 , HORVU0Hr1G008990.10 , HORVU0Hr1G008990.11
Wheat TraesCS4A02G050400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
2 Sobic.009G013400 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
3 Sobic.008G179800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
4 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
5 Sobic.003G153500 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.003G217500 expressed protein -
7 Sobic.010G207400 protein kinase domain containing protein, expressed -
8 Sobic.004G038900 expressed protein -
9 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
10 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
11 Sobic.009G254000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
12 Sobic.002G360900 GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
13 Sobic.008G045800 PHD-finger family protein, expressed -
14 Sobic.006G140300 expressed protein -
15 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
16 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
18 Sobic.006G091850 - -
19 Sobic.008G174500 expressed protein -
20 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -


Gene co-expression network
sample Sobic001G462401 Sobic001G462401 Sobic001G423300 Sobic001G423300 Sobic001G462401--Sobic001G423300 Sobic009G013400 Sobic009G013400 Sobic001G462401--Sobic009G013400 Sobic008G179800 Sobic008G179800 Sobic001G462401--Sobic008G179800 Sobic001G324800 Sobic001G324800 Sobic001G462401--Sobic001G324800 Sobic003G153500 Sobic003G153500 Sobic001G462401--Sobic003G153500 Sobic003G217500 Sobic003G217500 Sobic001G462401--Sobic003G217500 Sobic010G207400 Sobic010G207400 Sobic001G462401--Sobic010G207400 Sobic004G038900 Sobic004G038900 Sobic001G462401--Sobic004G038900 Sobic005G032400 Sobic005G032400 Sobic001G462401--Sobic005G032400 Sobic005G187400 Sobic005G187400 Sobic001G423300--Sobic005G187400 Sobic009G113100 Sobic009G113100 Sobic001G423300--Sobic009G113100 Sobic001G423300--Sobic001G462401 Sobic009G254000 Sobic009G254000 Sobic001G423300--Sobic009G254000 Sobic001G423300--Sobic010G207400 Sobic004G155800 Sobic004G155800 Sobic001G423300--Sobic004G155800 Sobic001G423300--Sobic008G179800 Sobic006G061100 Sobic006G061100 Sobic001G423300--Sobic006G061100 Sobic004G075700 Sobic004G075700 Sobic001G423300--Sobic004G075700 Sobic009G013400--Sobic003G153500 Sobic007G082900 Sobic007G082900 Sobic009G013400--Sobic007G082900 Sobic005G187100 Sobic005G187100 Sobic009G013400--Sobic005G187100 Sobic008G013100 Sobic008G013100 Sobic009G013400--Sobic008G013100 Sobic003G323000 Sobic003G323000 Sobic009G013400--Sobic003G323000 Sobic004G254400 Sobic004G254400 Sobic009G013400--Sobic004G254400 Sobic001G394100 Sobic001G394100 Sobic009G013400--Sobic001G394100 Sobic009G022700 Sobic009G022700 Sobic009G013400--Sobic009G022700 Sobic008G013000 Sobic008G013000 Sobic009G013400--Sobic008G013000 Sobic008G179800--Sobic010G207400 Sobic004G196800 Sobic004G196800 Sobic008G179800--Sobic004G196800 Sobic004G250600 Sobic004G250600 Sobic008G179800--Sobic004G250600 Sobic010G118200 Sobic010G118200 Sobic008G179800--Sobic010G118200 Sobic007G023600 Sobic007G023600 Sobic008G179800--Sobic007G023600 Sobic001G170500 Sobic001G170500 Sobic008G179800--Sobic001G170500 Sobic008G156200 Sobic008G156200 Sobic008G179800--Sobic008G156200 Sobic009G253800 Sobic009G253800 Sobic008G179800--Sobic009G253800 Sobic008G179800--Sobic004G038900 Sobic003G092600 Sobic003G092600 Sobic001G324800--Sobic003G092600 Sobic001G394900 Sobic001G394900 Sobic001G324800--Sobic001G394900 Sobic002G015800 Sobic002G015800 Sobic001G324800--Sobic002G015800 Sobic002G360900 Sobic002G360900 Sobic001G324800--Sobic002G360900 Sobic004G262100 Sobic004G262100 Sobic001G324800--Sobic004G262100 Sobic006G015800 Sobic006G015800 Sobic001G324800--Sobic006G015800 Sobic010G022600 Sobic010G022600 Sobic001G324800--Sobic010G022600 Sobic001G509100 Sobic001G509100 Sobic001G324800--Sobic001G509100 Sobic010G107300 Sobic010G107300 Sobic001G324800--Sobic010G107300 Sobic003G153500--Sobic009G013400 Sobic008G088450 Sobic008G088450 Sobic003G153500--Sobic008G088450 Sobic009G227000 Sobic009G227000 Sobic003G153500--Sobic009G227000 Sobic009G007500 Sobic009G007500 Sobic003G153500--Sobic009G007500 Sobic010G227400 Sobic010G227400 Sobic003G153500--Sobic010G227400 Sobic003G153500--Sobic001G170500 Sobic005G056100 Sobic005G056100 Sobic003G153500--Sobic005G056100 Sobic010G109700 Sobic010G109700 Sobic003G153500--Sobic010G109700 Sobic001G096500 Sobic001G096500 Sobic003G153500--Sobic001G096500 Sobic003G217500--Sobic004G250600 Sobic006G200901 Sobic006G200901 Sobic003G217500--Sobic006G200901 Sobic004G014100 Sobic004G014100 Sobic003G217500--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic003G217500--Sobic002G343000 Sobic009G148000 Sobic009G148000 Sobic003G217500--Sobic009G148000 Sobic006G140300 Sobic006G140300 Sobic003G217500--Sobic006G140300 Sobic003G217500--Sobic004G196800 Sobic003G304500 Sobic003G304500 Sobic003G217500--Sobic003G304500 Sobic006G186300 Sobic006G186300 Sobic003G217500--Sobic006G186300 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic004G038900--Sobic005G171800 Sobic007G128400 Sobic007G128400 Sobic004G038900--Sobic007G128400 Sobic004G038900--Sobic010G207400 Sobic003G207100 Sobic003G207100 Sobic004G038900--Sobic003G207100 Sobic003G091500 Sobic003G091500 Sobic004G038900--Sobic003G091500 Sobic002G007700 Sobic002G007700 Sobic004G038900--Sobic002G007700 Sobic005G174500 Sobic005G174500 Sobic004G038900--Sobic005G174500 Sobic010G047300 Sobic010G047300 Sobic004G038900--Sobic010G047300 Sobic008G184100 Sobic008G184100 Sobic004G038900--Sobic008G184100 Sobic003G004500 Sobic003G004500 Sobic005G032400--Sobic003G004500 Sobic010G262900 Sobic010G262900 Sobic005G032400--Sobic010G262900 Sobic003G415100 Sobic003G415100 Sobic005G032400--Sobic003G415100 Sobic001G053700 Sobic001G053700 Sobic005G032400--Sobic001G053700 Sobic002G403200 Sobic002G403200 Sobic005G032400--Sobic002G403200 Sobic005G050600 Sobic005G050600 Sobic005G032400--Sobic005G050600 Sobic009G156200 Sobic009G156200 Sobic005G032400--Sobic009G156200 Sobic010G180200 Sobic010G180200 Sobic005G032400--Sobic010G180200 Sobic008G045800 Sobic008G045800 Sobic005G032400--Sobic008G045800
Octagon: transcription factors


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