Gene annotation
Transcriptome id Sobic.009G234500.1
Synonym Sb09g028710, COR413IM2, COR314-TM2
Functional annotation similar to Cold acclimation protein COR413-TM1 (PubMedID : 29862293)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
cold acclimation protein WCOR413, putative, expressed
UniProt C5YVW4
Pfam PF05562
Panther DB PTHR33596 PTHR33596:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G29390 : cold regulated 314 thylakoid membrane 2
RAP-DB (Rice) LOC_Os05g49170.1 : cold acclimation protein WCOR413, putative, expressed
MaizeGDB (Corn) Zm00025a054099 , Zm00025a010336 , Zm00025a035332 , Zm00025a044592
Brachypodium KQK04839
Barley HORVU1Hr1G088780.4 , HORVU1Hr1G088780.5 , HORVU1Hr1G088780.6 , HORVU1Hr1G088780.7 , HORVU1Hr1G088780.2 , HORVU1Hr1G088780.3 , HORVU1Hr1G088780.8 , HORVU1Hr1G088780.9 , HORVU1Hr1G088780.10 , HORVU1Hr1G088780.11
Wheat -
Populus -


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cDNA sequences
Sobic.009G234500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G261529 - -
2 Sobic.002G266600 - K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
3 Sobic.002G099866 - -
4 Sobic.002G015800 OsFBD13 - F-box and FBD domain containing protein, expressed -
5 Sobic.001G264600 - -
6 Sobic.001G509100 expressed protein -
7 Sobic.003G035001 - -
8 Sobic.003G092600 seven in absentia protein family protein, expressed -
9 Sobic.005G083280 - -
10 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
11 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
12 Sobic.003G167200 - -
13 Sobic.004G322901 - -
14 Sobic.009G132400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@microtubule associated protein, putative, expressed -
15 Sobic.007G086701 - -
16 Sobic.003G101200 paired amphipathic helix repeat-containing protein, putative, expressed -
17 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
18 Sobic.004G340566 - -
19 Sobic.001G452100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
20 Sobic.005G083160 - -


Gene co-expression network
sample Sobic009G234500 Sobic009G234500 Sobic001G261529 Sobic001G261529 Sobic009G234500--Sobic001G261529 Sobic002G266600 Sobic002G266600 Sobic009G234500--Sobic002G266600 Sobic002G099866 Sobic002G099866 Sobic009G234500--Sobic002G099866 Sobic002G015800 Sobic002G015800 Sobic009G234500--Sobic002G015800 Sobic001G264600 Sobic001G264600 Sobic009G234500--Sobic001G264600 Sobic001G509100 Sobic001G509100 Sobic009G234500--Sobic001G509100 Sobic003G035001 Sobic003G035001 Sobic009G234500--Sobic003G035001 Sobic003G092600 Sobic003G092600 Sobic009G234500--Sobic003G092600 Sobic005G083280 Sobic005G083280 Sobic009G234500--Sobic005G083280 Sobic001G261529--Sobic005G083280 Sobic004G322901 Sobic004G322901 Sobic001G261529--Sobic004G322901 Sobic001G261529--Sobic001G264600 Sobic001G261529--Sobic003G092600 Sobic001G261529--Sobic002G015800 Sobic001G261529--Sobic002G266600 Sobic007G086701 Sobic007G086701 Sobic001G261529--Sobic007G086701 Sobic006G018751 Sobic006G018751 Sobic001G261529--Sobic006G018751 Sobic001G261529--Sobic002G099866 Sobic002G266600--Sobic001G264600 Sobic002G266600--Sobic002G099866 Sobic003G167200 Sobic003G167200 Sobic002G266600--Sobic003G167200 Sobic002G266600--Sobic007G086701 Sobic002G266600--Sobic001G261529 Sobic002G266600--Sobic003G035001 Sobic002G066700 Sobic002G066700 Sobic002G266600--Sobic002G066700 Sobic002G266600--Sobic006G018751 Sobic002G266600--Sobic005G083280 Sobic002G099866--Sobic002G266600 Sobic002G099866--Sobic001G509100 Sobic009G132400 Sobic009G132400 Sobic002G099866--Sobic009G132400 Sobic002G099866--Sobic001G264600 Sobic002G099866--Sobic003G167200 Sobic002G099866--Sobic001G261529 Sobic002G099866--Sobic003G035001 Sobic002G099866--Sobic002G015800 Sobic002G099866--Sobic007G086701 Sobic002G015800--Sobic003G092600 Sobic002G015800--Sobic001G261529 Sobic002G015800--Sobic005G083280 Sobic004G262100 Sobic004G262100 Sobic002G015800--Sobic004G262100 Sobic002G015800--Sobic001G509100 Sobic001G324800 Sobic001G324800 Sobic002G015800--Sobic001G324800 Sobic010G022600 Sobic010G022600 Sobic002G015800--Sobic010G022600 Sobic010G107300 Sobic010G107300 Sobic002G015800--Sobic010G107300 Sobic002G015800--Sobic004G322901 Sobic001G264600--Sobic007G086701 Sobic001G264600--Sobic002G266600 Sobic001G264600--Sobic006G018751 Sobic001G264600--Sobic001G261529 Sobic001G264600--Sobic005G083280 Sobic001G264600--Sobic002G099866 Sobic001G264600--Sobic002G066700 Sobic001G264600--Sobic004G322901 Sobic001G264600--Sobic003G167200 Sobic001G509100--Sobic002G099866 Sobic001G509100--Sobic002G015800 Sobic001G509100--Sobic003G092600 Sobic001G509100--Sobic003G035001 Sobic001G509100--Sobic004G262100 Sobic001G509100--Sobic002G266600 Sobic001G509100--Sobic001G261529 Sobic001G509100--Sobic009G132400 Sobic003G101200 Sobic003G101200 Sobic001G509100--Sobic003G101200 Sobic003G035001--Sobic003G167200 Sobic003G035001--Sobic002G266600 Sobic003G035001--Sobic002G099866 Sobic003G035001--Sobic001G509100 Sobic003G035001--Sobic001G264600 Sobic003G035001--Sobic001G261529 Sobic001G452100 Sobic001G452100 Sobic003G035001--Sobic001G452100 Sobic008G007900 Sobic008G007900 Sobic003G035001--Sobic008G007900 Sobic003G035001--Sobic009G234500 Sobic003G092600--Sobic002G015800 Sobic003G092600--Sobic005G083280 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic009G014900 Sobic009G014900 Sobic003G092600--Sobic009G014900 Sobic006G015800 Sobic006G015800 Sobic003G092600--Sobic006G015800 Sobic003G092600--Sobic004G262100 Sobic003G092600--Sobic001G324800 Sobic003G092600--Sobic001G509100 Sobic005G083280--Sobic001G261529 Sobic005G083280--Sobic004G322901 Sobic005G083280--Sobic003G092600 Sobic005G083280--Sobic002G015800 Sobic005G083280--Sobic001G264600 Sobic005G083280--Sobic006G018751 Sobic005G083280--Sobic006G015800 Sobic005G083280--Sobic007G086701 Sobic005G083280--Sobic009G014900
Octagon: transcription factors


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