Gene annotation
Transcriptome id Sobic.001G509100.1,Sobic.001G509100.3
Synonym RIN13
Functional annotation expressed protein
UniProt A0A1B6QQL0 , A0A1Z5SBG8
Pfam -
Panther DB PTHR33443 PTHR33443:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20310 : RPM1 interacting protein 13
RAP-DB (Rice) LOC_Os03g04740.1 : expressed protein
MaizeGDB (Corn) Zm00025a000567
Brachypodium KQK23722 , KQK23723 , PNT78233 , KQK23721
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G509100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G099866 - -
2 Sobic.002G015800 OsFBD13 - F-box and FBD domain containing protein, expressed -
3 Sobic.003G092600 seven in absentia protein family protein, expressed -
4 Sobic.003G035001 - -
5 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
6 Sobic.002G266600 - K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
7 Sobic.001G261529 - -
8 Sobic.009G132400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@microtubule associated protein, putative, expressed -
9 Sobic.003G101200 paired amphipathic helix repeat-containing protein, putative, expressed -
10 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
11 Sobic.005G083160 - -
12 Sobic.002G360900 GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
13 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
14 Sobic.003G167200 - -
15 Sobic.010G107300 - -
16 Sobic.009G218100 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
17 Sobic.001G452100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
18 Sobic.005G083280 - -
19 Sobic.001G264600 - -
20 Sobic.008G011400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2


Gene co-expression network
sample Sobic001G509100 Sobic001G509100 Sobic002G099866 Sobic002G099866 Sobic001G509100--Sobic002G099866 Sobic002G015800 Sobic002G015800 Sobic001G509100--Sobic002G015800 Sobic003G092600 Sobic003G092600 Sobic001G509100--Sobic003G092600 Sobic003G035001 Sobic003G035001 Sobic001G509100--Sobic003G035001 Sobic004G262100 Sobic004G262100 Sobic001G509100--Sobic004G262100 Sobic002G266600 Sobic002G266600 Sobic001G509100--Sobic002G266600 Sobic001G261529 Sobic001G261529 Sobic001G509100--Sobic001G261529 Sobic009G132400 Sobic009G132400 Sobic001G509100--Sobic009G132400 Sobic003G101200 Sobic003G101200 Sobic001G509100--Sobic003G101200 Sobic002G099866--Sobic002G266600 Sobic002G099866--Sobic001G509100 Sobic002G099866--Sobic009G132400 Sobic001G264600 Sobic001G264600 Sobic002G099866--Sobic001G264600 Sobic003G167200 Sobic003G167200 Sobic002G099866--Sobic003G167200 Sobic002G099866--Sobic001G261529 Sobic002G099866--Sobic003G035001 Sobic002G099866--Sobic002G015800 Sobic007G086701 Sobic007G086701 Sobic002G099866--Sobic007G086701 Sobic002G015800--Sobic003G092600 Sobic002G015800--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic002G015800--Sobic005G083280 Sobic002G015800--Sobic004G262100 Sobic002G015800--Sobic001G509100 Sobic001G324800 Sobic001G324800 Sobic002G015800--Sobic001G324800 Sobic010G022600 Sobic010G022600 Sobic002G015800--Sobic010G022600 Sobic010G107300 Sobic010G107300 Sobic002G015800--Sobic010G107300 Sobic004G322901 Sobic004G322901 Sobic002G015800--Sobic004G322901 Sobic003G092600--Sobic002G015800 Sobic003G092600--Sobic005G083280 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic009G014900 Sobic009G014900 Sobic003G092600--Sobic009G014900 Sobic006G015800 Sobic006G015800 Sobic003G092600--Sobic006G015800 Sobic003G092600--Sobic004G262100 Sobic003G092600--Sobic001G324800 Sobic003G092600--Sobic001G509100 Sobic003G035001--Sobic003G167200 Sobic003G035001--Sobic002G266600 Sobic003G035001--Sobic002G099866 Sobic003G035001--Sobic001G509100 Sobic003G035001--Sobic001G264600 Sobic003G035001--Sobic001G261529 Sobic001G452100 Sobic001G452100 Sobic003G035001--Sobic001G452100 Sobic008G007900 Sobic008G007900 Sobic003G035001--Sobic008G007900 Sobic009G234500 Sobic009G234500 Sobic003G035001--Sobic009G234500 Sobic004G262100--Sobic002G015800 Sobic004G262100--Sobic003G092600 Sobic004G262100--Sobic001G324800 Sobic004G262100--Sobic001G509100 Sobic002G360900 Sobic002G360900 Sobic004G262100--Sobic002G360900 Sobic004G262100--Sobic001G261529 Sobic004G262100--Sobic005G083280 Sobic004G262100--Sobic003G101200 Sobic004G262100--Sobic010G022600 Sobic002G266600--Sobic001G264600 Sobic002G266600--Sobic002G099866 Sobic002G266600--Sobic003G167200 Sobic002G266600--Sobic007G086701 Sobic002G266600--Sobic001G261529 Sobic002G266600--Sobic003G035001 Sobic002G066700 Sobic002G066700 Sobic002G266600--Sobic002G066700 Sobic006G018751 Sobic006G018751 Sobic002G266600--Sobic006G018751 Sobic002G266600--Sobic005G083280 Sobic001G261529--Sobic005G083280 Sobic001G261529--Sobic004G322901 Sobic001G261529--Sobic001G264600 Sobic001G261529--Sobic003G092600 Sobic001G261529--Sobic002G015800 Sobic001G261529--Sobic002G266600 Sobic001G261529--Sobic007G086701 Sobic001G261529--Sobic006G018751 Sobic001G261529--Sobic002G099866 Sobic009G132400--Sobic002G099866 Sobic009G132400--Sobic002G266600 Sobic009G132400--Sobic001G509100 Sobic004G340566 Sobic004G340566 Sobic009G132400--Sobic004G340566 Sobic009G132400--Sobic003G167200 Sobic009G132400--Sobic001G264600 Sobic009G132400--Sobic001G261529 Sobic009G132400--Sobic003G035001 Sobic009G132400--Sobic001G324800 Sobic005G083160 Sobic005G083160 Sobic003G101200--Sobic005G083160 Sobic003G101200--Sobic010G107300 Sobic009G218100 Sobic009G218100 Sobic003G101200--Sobic009G218100 Sobic003G101200--Sobic002G015800 Sobic003G101200--Sobic001G509100 Sobic003G101200--Sobic002G099866 Sobic003G101200--Sobic004G262100 Sobic003G101200--Sobic002G360900 Sobic003G101200--Sobic010G022600
Octagon: transcription factors


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