Gene annotation
Transcriptome id Sobic.001G452100.2
Synonym RD20, Sb01g042490, CLO-3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
caleosin related protein, putative, expressed
UniProt A0A1Z5SAN6
Pfam PF05042
Panther DB PTHR31495 PTHR31495:SF3
NCBI CDD -
KEGG Orthology K17991; peroxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33380 : Caleosin-related family protein
RAP-DB (Rice) LOC_Os03g12230.1 : caleosin related protein, putative, expressed
MaizeGDB (Corn) Zm00025a001348 , Zm00025a001347
Brachypodium KQK22834 , PNT77853
Barley HORVU4Hr1G067020.20 , HORVU4Hr1G067020.21 , HORVU4Hr1G067020.9 , HORVU4Hr1G067020.8 , HORVU4Hr1G067020.7 , HORVU4Hr1G067020.6 , HORVU4Hr1G067020.5 , HORVU4Hr1G067020.4 , HORVU4Hr1G067020.3 , HORVU4Hr1G067020.2 , HORVU4Hr1G067020.1 , HORVU4Hr1G067020.17 , HORVU4Hr1G067020.16 , HORVU4Hr1G067020.15 , HORVU4Hr1G067020.14 , HORVU4Hr1G067020.13 , HORVU4Hr1G067020.12 , HORVU4Hr1G067020.11 , HORVU4Hr1G067020.10 , HORVU4Hr1G067020.19 , HORVU4Hr1G067020.18
Wheat TraesCS4D02G241500 , TraesCS4D02G241500 , TraesCS4A02G064500 , TraesCS4A02G064500 , TraesCS4B02G241900 , TraesCS4B02G241900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G452100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G035001 - -
2 Sobic.003G101200 paired amphipathic helix repeat-containing protein, putative, expressed -
3 Sobic.002G266600 - K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
4 Sobic.001G509100 expressed protein -
5 Sobic.002G099866 - -
6 Sobic.003G167200 - -
7 Sobic.002G015800 OsFBD13 - F-box and FBD domain containing protein, expressed -
8 Sobic.001G261529 - -
9 Sobic.009G132400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@microtubule associated protein, putative, expressed -
10 Sobic.001G264600 - -
11 Sobic.005G083160 - -
12 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
13 Sobic.004G340566 - -
14 Sobic.003G425600 - -
15 Sobic.005G083280 - -
16 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
17 Sobic.008G007900 expressed protein -
18 Sobic.009G218100 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
19 Sobic.010G107300 - -
20 Sobic.003G092600 seven in absentia protein family protein, expressed -


Gene co-expression network
sample Sobic001G452100 Sobic001G452100 Sobic003G035001 Sobic003G035001 Sobic001G452100--Sobic003G035001 Sobic003G101200 Sobic003G101200 Sobic001G452100--Sobic003G101200 Sobic002G266600 Sobic002G266600 Sobic001G452100--Sobic002G266600 Sobic001G509100 Sobic001G509100 Sobic001G452100--Sobic001G509100 Sobic002G099866 Sobic002G099866 Sobic001G452100--Sobic002G099866 Sobic003G167200 Sobic003G167200 Sobic001G452100--Sobic003G167200 Sobic002G015800 Sobic002G015800 Sobic001G452100--Sobic002G015800 Sobic001G261529 Sobic001G261529 Sobic001G452100--Sobic001G261529 Sobic009G132400 Sobic009G132400 Sobic001G452100--Sobic009G132400 Sobic003G035001--Sobic003G167200 Sobic003G035001--Sobic002G266600 Sobic003G035001--Sobic002G099866 Sobic003G035001--Sobic001G509100 Sobic001G264600 Sobic001G264600 Sobic003G035001--Sobic001G264600 Sobic003G035001--Sobic001G261529 Sobic003G035001--Sobic001G452100 Sobic008G007900 Sobic008G007900 Sobic003G035001--Sobic008G007900 Sobic009G234500 Sobic009G234500 Sobic003G035001--Sobic009G234500 Sobic005G083160 Sobic005G083160 Sobic003G101200--Sobic005G083160 Sobic010G107300 Sobic010G107300 Sobic003G101200--Sobic010G107300 Sobic009G218100 Sobic009G218100 Sobic003G101200--Sobic009G218100 Sobic003G101200--Sobic002G015800 Sobic003G101200--Sobic001G509100 Sobic003G101200--Sobic002G099866 Sobic004G262100 Sobic004G262100 Sobic003G101200--Sobic004G262100 Sobic002G360900 Sobic002G360900 Sobic003G101200--Sobic002G360900 Sobic010G022600 Sobic010G022600 Sobic003G101200--Sobic010G022600 Sobic002G266600--Sobic001G264600 Sobic002G266600--Sobic002G099866 Sobic002G266600--Sobic003G167200 Sobic007G086701 Sobic007G086701 Sobic002G266600--Sobic007G086701 Sobic002G266600--Sobic001G261529 Sobic002G266600--Sobic003G035001 Sobic002G066700 Sobic002G066700 Sobic002G266600--Sobic002G066700 Sobic006G018751 Sobic006G018751 Sobic002G266600--Sobic006G018751 Sobic005G083280 Sobic005G083280 Sobic002G266600--Sobic005G083280 Sobic001G509100--Sobic002G099866 Sobic001G509100--Sobic002G015800 Sobic003G092600 Sobic003G092600 Sobic001G509100--Sobic003G092600 Sobic001G509100--Sobic003G035001 Sobic001G509100--Sobic004G262100 Sobic001G509100--Sobic002G266600 Sobic001G509100--Sobic001G261529 Sobic001G509100--Sobic009G132400 Sobic001G509100--Sobic003G101200 Sobic002G099866--Sobic002G266600 Sobic002G099866--Sobic001G509100 Sobic002G099866--Sobic009G132400 Sobic002G099866--Sobic001G264600 Sobic002G099866--Sobic003G167200 Sobic002G099866--Sobic001G261529 Sobic002G099866--Sobic003G035001 Sobic002G099866--Sobic002G015800 Sobic002G099866--Sobic007G086701 Sobic003G167200--Sobic002G266600 Sobic003G167200--Sobic003G035001 Sobic008G105600 Sobic008G105600 Sobic003G167200--Sobic008G105600 Sobic003G167200--Sobic002G099866 Sobic003G167200--Sobic008G007900 Sobic003G167200--Sobic001G264600 Sobic009G056900 Sobic009G056900 Sobic003G167200--Sobic009G056900 Sobic001G313150 Sobic001G313150 Sobic003G167200--Sobic001G313150 Sobic003G167200--Sobic009G132400 Sobic002G015800--Sobic003G092600 Sobic002G015800--Sobic001G261529 Sobic002G015800--Sobic005G083280 Sobic002G015800--Sobic004G262100 Sobic002G015800--Sobic001G509100 Sobic001G324800 Sobic001G324800 Sobic002G015800--Sobic001G324800 Sobic002G015800--Sobic010G022600 Sobic002G015800--Sobic010G107300 Sobic004G322901 Sobic004G322901 Sobic002G015800--Sobic004G322901 Sobic001G261529--Sobic005G083280 Sobic001G261529--Sobic004G322901 Sobic001G261529--Sobic001G264600 Sobic001G261529--Sobic003G092600 Sobic001G261529--Sobic002G015800 Sobic001G261529--Sobic002G266600 Sobic001G261529--Sobic007G086701 Sobic001G261529--Sobic006G018751 Sobic001G261529--Sobic002G099866 Sobic009G132400--Sobic002G099866 Sobic009G132400--Sobic002G266600 Sobic009G132400--Sobic001G509100 Sobic004G340566 Sobic004G340566 Sobic009G132400--Sobic004G340566 Sobic009G132400--Sobic003G167200 Sobic009G132400--Sobic001G264600 Sobic009G132400--Sobic001G261529 Sobic009G132400--Sobic003G035001 Sobic009G132400--Sobic001G324800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.