Gene annotation
Transcriptome id Sobic.008G045800.1
Synonym Sb08g003900
Functional annotation PHD-finger family protein, expressed
UniProt A0A1B6PBI7
Pfam -
Panther DB PTHR33304 PTHR33304:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43770 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os12g06480.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ92151 , KQJ92140
Barley -
Wheat TraesCS5A02G125100 , TraesCS5D02G132800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
2 Sobic.009G257500 expressed protein -
3 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
4 Sobic.010G262900 expressed protein -
5 Sobic.010G180200 transcription factor S-II, central domain containing protein, expressed -
6 Sobic.006G200901 - -
7 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
8 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
9 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
10 Sobic.009G254000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
11 Sobic.008G179800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
12 Sobic.009G069200 glycine-rich protein, putative, expressed -
13 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
14 Sobic.008G056200 OsFBX238 - F-box domain containing protein, expressed -
15 Sobic.002G354800 zinc finger family protein, putative, expressed -
16 Sobic.002G390400 expressed protein -
17 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
18 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -
19 Sobic.007G023600 ATP binding protein, putative, expressed -
20 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -


Gene co-expression network
sample Sobic008G045800 Sobic008G045800 Sobic001G005800 Sobic001G005800 Sobic008G045800--Sobic001G005800 Sobic009G257500 Sobic009G257500 Sobic008G045800--Sobic009G257500 Sobic004G014100 Sobic004G014100 Sobic008G045800--Sobic004G014100 Sobic010G262900 Sobic010G262900 Sobic008G045800--Sobic010G262900 Sobic010G180200 Sobic010G180200 Sobic008G045800--Sobic010G180200 Sobic006G200901 Sobic006G200901 Sobic008G045800--Sobic006G200901 Sobic002G230400 Sobic002G230400 Sobic008G045800--Sobic002G230400 Sobic010G236200 Sobic010G236200 Sobic008G045800--Sobic010G236200 Sobic004G075700 Sobic004G075700 Sobic008G045800--Sobic004G075700 Sobic002G253900 Sobic002G253900 Sobic001G005800--Sobic002G253900 Sobic001G005800--Sobic008G045800 Sobic002G056000 Sobic002G056000 Sobic001G005800--Sobic002G056000 Sobic002G335500 Sobic002G335500 Sobic001G005800--Sobic002G335500 Sobic009G148000 Sobic009G148000 Sobic001G005800--Sobic009G148000 Sobic001G005800--Sobic006G200901 Sobic006G106200 Sobic006G106200 Sobic001G005800--Sobic006G106200 Sobic001G005800--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic001G005800--Sobic002G343000 Sobic006G126600 Sobic006G126600 Sobic009G257500--Sobic006G126600 Sobic009G032200 Sobic009G032200 Sobic009G257500--Sobic009G032200 Sobic009G257500--Sobic008G045800 Sobic003G415100 Sobic003G415100 Sobic009G257500--Sobic003G415100 Sobic008G056200 Sobic008G056200 Sobic009G257500--Sobic008G056200 Sobic010G189100 Sobic010G189100 Sobic009G257500--Sobic010G189100 Sobic009G257500--Sobic010G236200 Sobic008G156200 Sobic008G156200 Sobic009G257500--Sobic008G156200 Sobic009G257500--Sobic010G262900 Sobic004G014100--Sobic002G343000 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic006G143300 Sobic006G143300 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic002G349000 Sobic002G349000 Sobic004G014100--Sobic002G349000 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic006G140300 Sobic006G140300 Sobic004G014100--Sobic006G140300 Sobic003G035500 Sobic003G035500 Sobic010G262900--Sobic003G035500 Sobic010G262900--Sobic008G045800 Sobic010G262900--Sobic003G415100 Sobic010G262900--Sobic009G257500 Sobic005G032400 Sobic005G032400 Sobic010G262900--Sobic005G032400 Sobic010G262900--Sobic008G156200 Sobic010G262900--Sobic010G189100 Sobic003G004500 Sobic003G004500 Sobic010G262900--Sobic003G004500 Sobic001G033400 Sobic001G033400 Sobic010G262900--Sobic001G033400 Sobic003G402100 Sobic003G402100 Sobic010G180200--Sobic003G402100 Sobic001G053700 Sobic001G053700 Sobic010G180200--Sobic001G053700 Sobic001G324800 Sobic001G324800 Sobic010G180200--Sobic001G324800 Sobic006G066400 Sobic006G066400 Sobic010G180200--Sobic006G066400 Sobic010G180200--Sobic004G014100 Sobic001G394900 Sobic001G394900 Sobic010G180200--Sobic001G394900 Sobic007G023600 Sobic007G023600 Sobic010G180200--Sobic007G023600 Sobic004G218000 Sobic004G218000 Sobic010G180200--Sobic004G218000 Sobic010G212700 Sobic010G212700 Sobic010G180200--Sobic010G212700 Sobic006G200901--Sobic002G343000 Sobic006G200901--Sobic006G143300 Sobic006G200901--Sobic004G014100 Sobic006G200901--Sobic009G148000 Sobic006G200901--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic006G200901--Sobic003G217500 Sobic006G186300 Sobic006G186300 Sobic006G200901--Sobic006G186300 Sobic006G200901--Sobic002G230400 Sobic006G200901--Sobic004G075700 Sobic002G230400--Sobic002G354800 Sobic002G230400--Sobic006G186300 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic002G230400--Sobic004G014100 Sobic004G163700 Sobic004G163700 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic010G236200--Sobic009G032200 Sobic010G269300 Sobic010G269300 Sobic010G236200--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic010G236200--Sobic010G149600 Sobic004G043750 Sobic004G043750 Sobic010G236200--Sobic004G043750 Sobic003G221500 Sobic003G221500 Sobic010G236200--Sobic003G221500 Sobic004G111000 Sobic004G111000 Sobic010G236200--Sobic004G111000 Sobic002G254800 Sobic002G254800 Sobic010G236200--Sobic002G254800 Sobic010G236200--Sobic009G257500 Sobic007G125700 Sobic007G125700 Sobic010G236200--Sobic007G125700 Sobic004G075700--Sobic006G186300 Sobic010G207400 Sobic010G207400 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic001G305100 Sobic001G305100 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic003G026900 Sobic003G026900 Sobic004G075700--Sobic003G026900 Sobic006G061100 Sobic006G061100 Sobic004G075700--Sobic006G061100 Sobic006G161300 Sobic006G161300 Sobic004G075700--Sobic006G161300 Sobic005G131800 Sobic005G131800 Sobic004G075700--Sobic005G131800
Octagon: transcription factors


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