Gene annotation
Transcriptome id Sobic.005G030100.1
Synonym IPMS2, MAML-3, Sb05g002540, IMS1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
2-isopropylmalate synthase B, putative, expressed
UniProt C5Y4G6
Pfam PF08502 PF00682
Panther DB PTHR10277 PTHR10277:SF42
NCBI CDD -
KEGG Orthology K01649; leuA, 2-isopropylmalate synthase
Gene Ontology GO:0009098; leucine biosynthetic process GO:00038522-isopropylmalate synthase activity GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G74040 : 2-isopropylmalate synthase 1
RAP-DB (Rice) LOC_Os12g04440.1 : 2-isopropylmalate synthase B, putative, expressed
MaizeGDB (Corn) Zm00025a013076 , Zm00025a053683 , Zm00025a033442
Brachypodium KQJ92364
Barley HORVU5Hr1G043190.4 , HORVU5Hr1G043190.5 , HORVU5Hr1G043190.1 , HORVU5Hr1G043190.2 , HORVU5Hr1G043190.3
Wheat TraesCS5B02G133500 , TraesCS5D02G139800 , TraesCS5D02G139800 , TraesCS5A02G131300 , TraesCS7A02G179500
Populus -


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cDNA sequences
Sobic.005G030100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
2 Sobic.002G390400 expressed protein -
3 Sobic.010G207400 protein kinase domain containing protein, expressed -
4 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7
5 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
6 Sobic.008G052200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@beta-galactosidase precursor, putative, expressed -
7 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
8 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
9 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
10 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
11 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
12 Sobic.004G210000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
13 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
14 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
15 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
16 Sobic.005G074400 OsPDIL1-1 protein disulfide isomerase PDIL1-1, expressed K09580: PDIA1, protein disulfide-isomerase A1
17 Sobic.009G055600 TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
18 Sobic.009G132600 methyl-binding domain protein MBD, putative, expressed -
19 Sobic.004G050300 FAD dependent oxidoreductase domain containing protein, expressed -
20 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -


Gene co-expression network
sample Sobic005G030100 Sobic005G030100 Sobic009G030400 Sobic009G030400 Sobic005G030100--Sobic009G030400 Sobic002G390400 Sobic002G390400 Sobic005G030100--Sobic002G390400 Sobic010G207400 Sobic010G207400 Sobic005G030100--Sobic010G207400 Sobic007G150700 Sobic007G150700 Sobic005G030100--Sobic007G150700 Sobic003G161800 Sobic003G161800 Sobic005G030100--Sobic003G161800 Sobic008G052200 Sobic008G052200 Sobic005G030100--Sobic008G052200 Sobic006G061100 Sobic006G061100 Sobic005G030100--Sobic006G061100 Sobic001G423300 Sobic001G423300 Sobic005G030100--Sobic001G423300 Sobic008G160500 Sobic008G160500 Sobic005G030100--Sobic008G160500 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic009G030400--Sobic003G161800 Sobic009G030400--Sobic008G160500 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic001G135500 Sobic001G135500 Sobic002G390400--Sobic001G135500 Sobic003G415100 Sobic003G415100 Sobic002G390400--Sobic003G415100 Sobic009G069200 Sobic009G069200 Sobic002G390400--Sobic009G069200 Sobic005G198200 Sobic005G198200 Sobic002G390400--Sobic005G198200 Sobic002G390400--Sobic005G030100 Sobic002G390400--Sobic009G030400 Sobic009G113100 Sobic009G113100 Sobic002G390400--Sobic009G113100 Sobic008G156200 Sobic008G156200 Sobic002G390400--Sobic008G156200 Sobic001G429200 Sobic001G429200 Sobic002G390400--Sobic001G429200 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic001G442200 Sobic001G442200 Sobic007G150700--Sobic001G442200 Sobic004G196800 Sobic004G196800 Sobic007G150700--Sobic004G196800 Sobic007G150700--Sobic005G171800 Sobic004G212350 Sobic004G212350 Sobic007G150700--Sobic004G212350 Sobic005G032500 Sobic005G032500 Sobic007G150700--Sobic005G032500 Sobic010G060100 Sobic010G060100 Sobic007G150700--Sobic010G060100 Sobic002G100000 Sobic002G100000 Sobic007G150700--Sobic002G100000 Sobic001G425900 Sobic001G425900 Sobic007G150700--Sobic001G425900 Sobic010G084800 Sobic010G084800 Sobic007G150700--Sobic010G084800 Sobic002G254800 Sobic002G254800 Sobic003G161800--Sobic002G254800 Sobic001G373000 Sobic001G373000 Sobic003G161800--Sobic001G373000 Sobic003G161800--Sobic009G030400 Sobic006G179400 Sobic006G179400 Sobic003G161800--Sobic006G179400 Sobic003G180100 Sobic003G180100 Sobic003G161800--Sobic003G180100 Sobic010G236200 Sobic010G236200 Sobic003G161800--Sobic010G236200 Sobic003G161800--Sobic005G030100 Sobic003G161800--Sobic009G113100 Sobic001G115500 Sobic001G115500 Sobic003G161800--Sobic001G115500 Sobic008G052200--Sobic005G030100 Sobic008G052200--Sobic003G161800 Sobic004G050300 Sobic004G050300 Sobic008G052200--Sobic004G050300 Sobic003G184400 Sobic003G184400 Sobic008G052200--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic008G052200--Sobic005G199200 Sobic002G126800 Sobic002G126800 Sobic008G052200--Sobic002G126800 Sobic008G052200--Sobic002G254800 Sobic008G052200--Sobic001G423300 Sobic009G055400 Sobic009G055400 Sobic008G052200--Sobic009G055400 Sobic004G075700 Sobic004G075700 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650 Sobic005G187400 Sobic005G187400 Sobic001G423300--Sobic005G187400 Sobic001G423300--Sobic009G113100 Sobic001G462401 Sobic001G462401 Sobic001G423300--Sobic001G462401 Sobic009G254000 Sobic009G254000 Sobic001G423300--Sobic009G254000 Sobic001G423300--Sobic010G207400 Sobic004G155800 Sobic004G155800 Sobic001G423300--Sobic004G155800 Sobic008G179800 Sobic008G179800 Sobic001G423300--Sobic008G179800 Sobic001G423300--Sobic006G061100 Sobic001G423300--Sobic004G075700 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic002G403200 Sobic002G403200 Sobic008G160500--Sobic002G403200 Sobic003G004500 Sobic003G004500 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic001G033400 Sobic001G033400 Sobic008G160500--Sobic001G033400
Octagon: transcription factors


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