Gene annotation
Transcriptome id Sobic.004G210000.1
Synonym Sb04g025560
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ACT domain containing protein, expressed
UniProt C5XX95
Pfam PF13710 PF10369
Panther DB PTHR30239 PTHR30239:SF5
NCBI CDD KOG2663; Acetolactate synthase, small subunit
KEGG Orthology K01653; E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G31810 : ACT domain-containing small subunit of acetolactate synthase protein
RAP-DB (Rice) LOC_Os02g39570.4 : ACT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021223 , Zm00025a031906
Brachypodium KQK00274
Barley HORVU6Hr1G055840.6 , HORVU6Hr1G055840.7 , HORVU6Hr1G055840.4 , HORVU6Hr1G055840.5 , HORVU6Hr1G055840.2 , HORVU6Hr1G055840.3 , HORVU6Hr1G055840.1 , HORVU6Hr1G055840.8 , HORVU6Hr1G055840.9 , HORVU6Hr1G055840.14 , HORVU6Hr1G055840.15 , HORVU6Hr1G055840.16 , HORVU6Hr1G055840.10 , HORVU6Hr1G055840.11 , HORVU6Hr1G055840.12 , HORVU6Hr1G055840.13 , HORVU2Hr1G111980.1
Wheat TraesCS6A02G218300 , TraesCS6D02G201500 , TraesCS6D02G201500 , TraesCS6D02G201500 , TraesCS6B02G247900 , TraesCS6B02G247900
Populus -


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cDNA sequences
Sobic.004G210000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
2 Sobic.003G430100 Phosphoesterase family protein(PubMedID : 24906815)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
3 Sobic.008G116100 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
4 Sobic.010G020100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
5 Sobic.007G041200 cytochrome P450, putative, expressed -
6 Sobic.010G084800 - -
7 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7
8 Sobic.010G047300 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.008G109600 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
10 Sobic.001G249200 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.009G033500 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
13 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
14 Sobic.001G401975 - -
15 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
16 Sobic.010G060100 leucoanthocyanidin dioxygenase, putative, expressed -
17 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
18 Sobic.002G293100 ZOS9-17 - C2H2 zinc finger protein, expressed -
19 Sobic.002G086500 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
20 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain


Gene co-expression network
sample Sobic004G210000 Sobic004G210000 Sobic004G196800 Sobic004G196800 Sobic004G210000--Sobic004G196800 Sobic003G430100 Sobic003G430100 Sobic004G210000--Sobic003G430100 Sobic008G116100 Sobic008G116100 Sobic004G210000--Sobic008G116100 Sobic010G020100 Sobic010G020100 Sobic004G210000--Sobic010G020100 Sobic007G041200 Sobic007G041200 Sobic004G210000--Sobic007G041200 Sobic010G084800 Sobic010G084800 Sobic004G210000--Sobic010G084800 Sobic007G150700 Sobic007G150700 Sobic004G210000--Sobic007G150700 Sobic010G047300 Sobic010G047300 Sobic004G210000--Sobic010G047300 Sobic008G109600 Sobic008G109600 Sobic004G210000--Sobic008G109600 Sobic009G025100 Sobic009G025100 Sobic004G196800--Sobic009G025100 Sobic004G196800--Sobic004G210000 Sobic006G015800 Sobic006G015800 Sobic004G196800--Sobic006G015800 Sobic010G207400 Sobic010G207400 Sobic004G196800--Sobic010G207400 Sobic004G196800--Sobic010G047300 Sobic005G077900 Sobic005G077900 Sobic004G196800--Sobic005G077900 Sobic002G293100 Sobic002G293100 Sobic004G196800--Sobic002G293100 Sobic004G038900 Sobic004G038900 Sobic004G196800--Sobic004G038900 Sobic009G033500 Sobic009G033500 Sobic004G196800--Sobic009G033500 Sobic003G430100--Sobic004G210000 Sobic003G430100--Sobic004G196800 Sobic003G430100--Sobic010G047300 Sobic003G430100--Sobic009G033500 Sobic003G430100--Sobic002G293100 Sobic006G186300 Sobic006G186300 Sobic003G430100--Sobic006G186300 Sobic003G430100--Sobic010G084800 Sobic002G247300 Sobic002G247300 Sobic003G430100--Sobic002G247300 Sobic003G430100--Sobic009G025100 Sobic008G116100--Sobic007G041200 Sobic008G116100--Sobic009G033500 Sobic008G116100--Sobic010G084800 Sobic002G097601 Sobic002G097601 Sobic008G116100--Sobic002G097601 Sobic008G116100--Sobic004G210000 Sobic005G176875 Sobic005G176875 Sobic008G116100--Sobic005G176875 Sobic004G339900 Sobic004G339900 Sobic008G116100--Sobic004G339900 Sobic008G116100--Sobic006G186300 Sobic008G116100--Sobic010G047300 Sobic001G401975 Sobic001G401975 Sobic010G020100--Sobic001G401975 Sobic002G172100 Sobic002G172100 Sobic010G020100--Sobic002G172100 Sobic003G266100 Sobic003G266100 Sobic010G020100--Sobic003G266100 Sobic002G172200 Sobic002G172200 Sobic010G020100--Sobic002G172200 Sobic003G294800 Sobic003G294800 Sobic010G020100--Sobic003G294800 Sobic001G284700 Sobic001G284700 Sobic010G020100--Sobic001G284700 Sobic004G220900 Sobic004G220900 Sobic010G020100--Sobic004G220900 Sobic001G261700 Sobic001G261700 Sobic010G020100--Sobic001G261700 Sobic003G106400 Sobic003G106400 Sobic010G020100--Sobic003G106400 Sobic007G041200--Sobic008G116100 Sobic007G041200--Sobic009G033500 Sobic007G041200--Sobic010G084800 Sobic007G041200--Sobic010G047300 Sobic007G041200--Sobic002G097601 Sobic007G041200--Sobic006G186300 Sobic007G091200 Sobic007G091200 Sobic007G041200--Sobic007G091200 Sobic007G041200--Sobic008G109600 Sobic010G060100 Sobic010G060100 Sobic007G041200--Sobic010G060100 Sobic010G084800--Sobic010G047300 Sobic010G084800--Sobic008G109600 Sobic002G161600 Sobic002G161600 Sobic010G084800--Sobic002G161600 Sobic001G274025 Sobic001G274025 Sobic010G084800--Sobic001G274025 Sobic006G264800 Sobic006G264800 Sobic010G084800--Sobic006G264800 Sobic009G021400 Sobic009G021400 Sobic010G084800--Sobic009G021400 Sobic007G205400 Sobic007G205400 Sobic010G084800--Sobic007G205400 Sobic010G084800--Sobic010G060100 Sobic002G409300 Sobic002G409300 Sobic010G084800--Sobic002G409300 Sobic001G442200 Sobic001G442200 Sobic007G150700--Sobic001G442200 Sobic007G150700--Sobic004G196800 Sobic005G171800 Sobic005G171800 Sobic007G150700--Sobic005G171800 Sobic004G212350 Sobic004G212350 Sobic007G150700--Sobic004G212350 Sobic005G032500 Sobic005G032500 Sobic007G150700--Sobic005G032500 Sobic007G150700--Sobic010G060100 Sobic002G100000 Sobic002G100000 Sobic007G150700--Sobic002G100000 Sobic001G425900 Sobic001G425900 Sobic007G150700--Sobic001G425900 Sobic007G150700--Sobic010G084800 Sobic009G058300 Sobic009G058300 Sobic010G047300--Sobic009G058300 Sobic010G047300--Sobic006G264800 Sobic010G047300--Sobic002G172100 Sobic001G489075 Sobic001G489075 Sobic010G047300--Sobic001G489075 Sobic010G047300--Sobic008G109600 Sobic002G108300 Sobic002G108300 Sobic010G047300--Sobic002G108300 Sobic010G047300--Sobic002G172200 Sobic010G047300--Sobic001G284700 Sobic002G015400 Sobic002G015400 Sobic010G047300--Sobic002G015400 Sobic008G109600--Sobic003G294800 Sobic005G188800 Sobic005G188800 Sobic008G109600--Sobic005G188800 Sobic008G109600--Sobic002G172100 Sobic008G109600--Sobic003G266100 Sobic008G109600--Sobic006G264800 Sobic008G109600--Sobic002G172200 Sobic008G109600--Sobic001G274025 Sobic005G082300 Sobic005G082300 Sobic008G109600--Sobic005G082300 Sobic008G109600--Sobic009G021400
Octagon: transcription factors


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