Gene annotation
Transcriptome id Sobic.008G052200.1
Synonym Sb08g004410, BGAL9
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
beta-galactosidase precursor, putative, expressed
UniProt C5YSN7
Pfam PF02140 PF01301
Panther DB PTHR23421 PTHR23421:SF69
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT2G32810 : beta galactosidase 9
RAP-DB (Rice) LOC_Os12g24170.1 : beta-galactosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a025747
Brachypodium KQJ86836 , KQJ86837 , KQJ86838
Barley HORVU5Hr1G045820.1 , HORVU5Hr1G045820.6 , HORVU5Hr1G045820.4 , HORVU5Hr1G045800.4 , HORVU5Hr1G045800.6 , HORVU5Hr1G045800.1 , HORVU5Hr1G045800.3 , HORVU5Hr1G045820.10 , HORVU5Hr1G045800.5 , HORVU5Hr1G045820.8 , HORVU5Hr1G045820.9 , HORVU5Hr1G045820.2 , HORVU5Hr1G045820.3 , HORVU5Hr1G045820.7 , HORVU5Hr1G045820.5
Wheat TraesCS5D02G148400 , TraesCS5B02G142600 , TraesCS5A02G143600 , TraesCS5A02G143600 , TraesCS5A02G143600 , TraesCS5A02G143600 , TraesCS5A02G143600
Populus -


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cDNA sequences
Sobic.008G052200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase
2 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
3 Sobic.004G050300 FAD dependent oxidoreductase domain containing protein, expressed -
4 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
5 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
6 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
8 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
9 Sobic.009G055400 expressed protein -
10 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49
11 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
12 Sobic.007G167800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroxy-acid dehydratase, putative, expressed K01687: dihydroxy-acid dehydratase
13 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
14 Sobic.008G169800 galactosyltransferase family protein, putative, expressed -
15 Sobic.002G022800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX234 - F-box domain containing protein, expressed -
16 Sobic.001G373700 CW-type Zinc Finger, putative, expressed -
17 Sobic.006G058800 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
18 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
19 Sobic.006G173200 beige/BEACH domain containing protein, expressed -
20 Sobic.002G033700 AIR9 protein, putative, expressed -


Gene co-expression network
sample Sobic008G052200 Sobic008G052200 Sobic005G030100 Sobic005G030100 Sobic008G052200--Sobic005G030100 Sobic003G161800 Sobic003G161800 Sobic008G052200--Sobic003G161800 Sobic004G050300 Sobic004G050300 Sobic008G052200--Sobic004G050300 Sobic003G184400 Sobic003G184400 Sobic008G052200--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic008G052200--Sobic005G199200 Sobic002G126800 Sobic002G126800 Sobic008G052200--Sobic002G126800 Sobic002G254800 Sobic002G254800 Sobic008G052200--Sobic002G254800 Sobic001G423300 Sobic001G423300 Sobic008G052200--Sobic001G423300 Sobic009G055400 Sobic009G055400 Sobic008G052200--Sobic009G055400 Sobic009G030400 Sobic009G030400 Sobic005G030100--Sobic009G030400 Sobic002G390400 Sobic002G390400 Sobic005G030100--Sobic002G390400 Sobic010G207400 Sobic010G207400 Sobic005G030100--Sobic010G207400 Sobic007G150700 Sobic007G150700 Sobic005G030100--Sobic007G150700 Sobic005G030100--Sobic003G161800 Sobic005G030100--Sobic008G052200 Sobic006G061100 Sobic006G061100 Sobic005G030100--Sobic006G061100 Sobic005G030100--Sobic001G423300 Sobic008G160500 Sobic008G160500 Sobic005G030100--Sobic008G160500 Sobic003G161800--Sobic002G254800 Sobic001G373000 Sobic001G373000 Sobic003G161800--Sobic001G373000 Sobic003G161800--Sobic009G030400 Sobic006G179400 Sobic006G179400 Sobic003G161800--Sobic006G179400 Sobic003G180100 Sobic003G180100 Sobic003G161800--Sobic003G180100 Sobic010G236200 Sobic010G236200 Sobic003G161800--Sobic010G236200 Sobic003G161800--Sobic005G030100 Sobic009G113100 Sobic009G113100 Sobic003G161800--Sobic009G113100 Sobic001G115500 Sobic001G115500 Sobic003G161800--Sobic001G115500 Sobic007G167800 Sobic007G167800 Sobic004G050300--Sobic007G167800 Sobic001G429200 Sobic001G429200 Sobic004G050300--Sobic001G429200 Sobic007G072100 Sobic007G072100 Sobic004G050300--Sobic007G072100 Sobic003G103701 Sobic003G103701 Sobic004G050300--Sobic003G103701 Sobic003G113900 Sobic003G113900 Sobic004G050300--Sobic003G113900 Sobic006G200901 Sobic006G200901 Sobic004G050300--Sobic006G200901 Sobic002G253900 Sobic002G253900 Sobic004G050300--Sobic002G253900 Sobic009G068700 Sobic009G068700 Sobic004G050300--Sobic009G068700 Sobic004G050300--Sobic005G030100 Sobic003G184400--Sobic005G199200 Sobic001G334100 Sobic001G334100 Sobic003G184400--Sobic001G334100 Sobic002G142600 Sobic002G142600 Sobic003G184400--Sobic002G142600 Sobic009G074700 Sobic009G074700 Sobic003G184400--Sobic009G074700 Sobic004G036700 Sobic004G036700 Sobic003G184400--Sobic004G036700 Sobic001G090300 Sobic001G090300 Sobic003G184400--Sobic001G090300 Sobic002G005000 Sobic002G005000 Sobic003G184400--Sobic002G005000 Sobic005G137700 Sobic005G137700 Sobic003G184400--Sobic005G137700 Sobic002G408600 Sobic002G408600 Sobic003G184400--Sobic002G408600 Sobic005G199200--Sobic001G090300 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic003G432300 Sobic003G432300 Sobic002G126800--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic002G126800--Sobic009G104900 Sobic002G132600 Sobic002G132600 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic006G033101 Sobic006G033101 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic005G088900 Sobic005G088900 Sobic002G126800--Sobic005G088900 Sobic002G254800--Sobic003G161800 Sobic002G254800--Sobic002G132600 Sobic002G254800--Sobic001G373000 Sobic002G254800--Sobic010G236200 Sobic003G259600 Sobic003G259600 Sobic002G254800--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic002G254800--Sobic001G373800 Sobic002G254800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic002G254800--Sobic004G038100 Sobic009G032200 Sobic009G032200 Sobic002G254800--Sobic009G032200 Sobic005G187400 Sobic005G187400 Sobic001G423300--Sobic005G187400 Sobic001G423300--Sobic009G113100 Sobic001G462401 Sobic001G462401 Sobic001G423300--Sobic001G462401 Sobic009G254000 Sobic009G254000 Sobic001G423300--Sobic009G254000 Sobic001G423300--Sobic010G207400 Sobic004G155800 Sobic004G155800 Sobic001G423300--Sobic004G155800 Sobic008G179800 Sobic008G179800 Sobic001G423300--Sobic008G179800 Sobic001G423300--Sobic006G061100 Sobic004G075700 Sobic004G075700 Sobic001G423300--Sobic004G075700 Sobic001G366800 Sobic001G366800 Sobic009G055400--Sobic001G366800 Sobic006G056000 Sobic006G056000 Sobic009G055400--Sobic006G056000 Sobic009G096100 Sobic009G096100 Sobic009G055400--Sobic009G096100 Sobic004G232000 Sobic004G232000 Sobic009G055400--Sobic004G232000 Sobic003G131200 Sobic003G131200 Sobic009G055400--Sobic003G131200 Sobic009G126000 Sobic009G126000 Sobic009G055400--Sobic009G126000 Sobic009G213100 Sobic009G213100 Sobic009G055400--Sobic009G213100 Sobic002G192500 Sobic002G192500 Sobic009G055400--Sobic002G192500 Sobic009G253400 Sobic009G253400 Sobic009G055400--Sobic009G253400
Octagon: transcription factors


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