Gene annotation
Transcriptome id Sobic.002G022800.5,Sobic.002G022800.4,Sobic.002G022800.1
Synonym Sb02g002092
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBX234 - F-box domain containing protein, expressed
UniProt A0A1B6Q8S0
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF148
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g23900.1 : OsFBX234 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU4Hr1G043620.3 , HORVU4Hr1G043620.2 , HORVU4Hr1G043620.1 , HORVU4Hr1G043620.4 , HORVU6Hr1G014370.5 , HORVU6Hr1G014370.4 , HORVU6Hr1G014370.8 , HORVU6Hr1G014370.7 , HORVU6Hr1G014370.6 , HORVU6Hr1G014370.3 , HORVU6Hr1G014370.2 , HORVU6Hr1G014370.1
Wheat TraesCS5D02G541700 , TraesCS6D02G077200 , TraesCS4D02G097000 , TraesCS4D02G097000 , TraesCS4B02G100500 , TraesCSU02G142000 , TraesCS6D02G061200 , TraesCS6A02G083500 , TraesCS2B02G512800 , TraesCS4A02G215700 , TraesCS1B02G271200 , TraesCS2D02G486000 , TraesCS4D02G097100 , TraesCS1D02G260600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G049800 DDT domain containing protein, putative, expressed -
2 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
3 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
4 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
5 Sobic.002G354700 zinc finger family protein, putative, expressed -
6 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
7 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
8 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
9 Sobic.004G313500 acetyltransferase, GNAT family, putative, expressed -
10 Sobic.004G027400 - -
11 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
12 Sobic.001G453500 expressed protein -
13 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
14 Sobic.004G027300 expressed protein -
15 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
16 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda
17 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
18 Sobic.006G187500 deoxyribonuclease tatD, putative, expressed K03424: TatD DNase family protein
19 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
20 Sobic.008G101900 plastid division regulator MinE, putative, expressed -


Gene co-expression network
sample Sobic002G022800 Sobic002G022800 Sobic001G049800 Sobic001G049800 Sobic002G022800--Sobic001G049800 Sobic001G437801 Sobic001G437801 Sobic002G022800--Sobic001G437801 Sobic006G271900 Sobic006G271900 Sobic002G022800--Sobic006G271900 Sobic006G140400 Sobic006G140400 Sobic002G022800--Sobic006G140400 Sobic002G354700 Sobic002G354700 Sobic002G022800--Sobic002G354700 Sobic009G163600 Sobic009G163600 Sobic002G022800--Sobic009G163600 Sobic003G425100 Sobic003G425100 Sobic002G022800--Sobic003G425100 Sobic001G368300 Sobic001G368300 Sobic002G022800--Sobic001G368300 Sobic004G313500 Sobic004G313500 Sobic002G022800--Sobic004G313500 Sobic007G060600 Sobic007G060600 Sobic001G049800--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic001G049800--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic006G111200 Sobic006G111200 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic010G099300 Sobic010G099300 Sobic001G437801--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic001G437801--Sobic001G040600 Sobic001G395300 Sobic001G395300 Sobic001G437801--Sobic001G395300 Sobic001G138000 Sobic001G138000 Sobic001G437801--Sobic001G138000 Sobic007G182600 Sobic007G182600 Sobic001G437801--Sobic007G182600 Sobic003G030400 Sobic003G030400 Sobic001G437801--Sobic003G030400 Sobic001G437801--Sobic001G368300 Sobic001G228300 Sobic001G228300 Sobic001G437801--Sobic001G228300 Sobic001G437801--Sobic001G049800 Sobic006G271900--Sobic001G040600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic006G271900--Sobic001G049800 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic001G453500 Sobic001G453500 Sobic006G140400--Sobic001G453500 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic002G354700--Sobic004G313500 Sobic008G101900 Sobic008G101900 Sobic002G354700--Sobic008G101900 Sobic002G354700--Sobic006G140400 Sobic002G354700--Sobic009G163600 Sobic003G223000 Sobic003G223000 Sobic002G354700--Sobic003G223000 Sobic006G274100 Sobic006G274100 Sobic002G354700--Sobic006G274100 Sobic002G354700--Sobic010G099300 Sobic002G354700--Sobic010G032300 Sobic009G177200 Sobic009G177200 Sobic002G354700--Sobic009G177200 Sobic009G163600--Sobic003G425100 Sobic003G436600 Sobic003G436600 Sobic009G163600--Sobic003G436600 Sobic009G163600--Sobic002G112600 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic008G163500 Sobic008G163500 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic009G163600--Sobic007G059700 Sobic009G163600--Sobic006G140400 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G425100--Sobic003G436600 Sobic006G198600 Sobic006G198600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic001G368300--Sobic006G111200 Sobic001G368300--Sobic001G453500 Sobic001G368300--Sobic007G060600 Sobic001G368300--Sobic004G027300 Sobic001G368300--Sobic001G040600 Sobic001G368300--Sobic007G059700 Sobic009G148200 Sobic009G148200 Sobic001G368300--Sobic009G148200 Sobic006G273900 Sobic006G273900 Sobic001G368300--Sobic006G273900 Sobic001G368300--Sobic003G436600 Sobic009G216500 Sobic009G216500 Sobic004G313500--Sobic009G216500 Sobic004G313500--Sobic006G140400 Sobic001G448100 Sobic001G448100 Sobic004G313500--Sobic001G448100 Sobic004G313500--Sobic002G354700 Sobic006G106200 Sobic006G106200 Sobic004G313500--Sobic006G106200 Sobic010G269300 Sobic010G269300 Sobic004G313500--Sobic010G269300 Sobic004G020900 Sobic004G020900 Sobic004G313500--Sobic004G020900 Sobic007G031300 Sobic007G031300 Sobic004G313500--Sobic007G031300 Sobic004G313500--Sobic001G453500
Octagon: transcription factors


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