Gene annotation
Transcriptome id Sobic.002G354700.2
Synonym
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6QF60
Pfam -
Panther DB PTHR24009
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52980 : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os07g39440.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G313500 acetyltransferase, GNAT family, putative, expressed -
2 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
3 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
4 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
5 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
7 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
8 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.009G177200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
10 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
11 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
12 Sobic.002G022800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX234 - F-box domain containing protein, expressed -
13 Sobic.010G224700 - K17680: twinkle protein
14 Sobic.004G027400 - -
15 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
16 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
17 Sobic.001G158400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@recA protein, putative, expressed K03553: recombination protein RecA
18 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
19 Sobic.004G119400 ATP-binding domain-containing protein, putative, expressed -
20 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda


Gene co-expression network
sample Sobic002G354700 Sobic002G354700 Sobic004G313500 Sobic004G313500 Sobic002G354700--Sobic004G313500 Sobic008G101900 Sobic008G101900 Sobic002G354700--Sobic008G101900 Sobic006G140400 Sobic006G140400 Sobic002G354700--Sobic006G140400 Sobic009G163600 Sobic009G163600 Sobic002G354700--Sobic009G163600 Sobic003G223000 Sobic003G223000 Sobic002G354700--Sobic003G223000 Sobic006G274100 Sobic006G274100 Sobic002G354700--Sobic006G274100 Sobic010G099300 Sobic010G099300 Sobic002G354700--Sobic010G099300 Sobic010G032300 Sobic010G032300 Sobic002G354700--Sobic010G032300 Sobic009G177200 Sobic009G177200 Sobic002G354700--Sobic009G177200 Sobic009G216500 Sobic009G216500 Sobic004G313500--Sobic009G216500 Sobic004G313500--Sobic006G140400 Sobic001G448100 Sobic001G448100 Sobic004G313500--Sobic001G448100 Sobic004G313500--Sobic002G354700 Sobic006G106200 Sobic006G106200 Sobic004G313500--Sobic006G106200 Sobic010G269300 Sobic010G269300 Sobic004G313500--Sobic010G269300 Sobic004G020900 Sobic004G020900 Sobic004G313500--Sobic004G020900 Sobic007G031300 Sobic007G031300 Sobic004G313500--Sobic007G031300 Sobic001G453500 Sobic001G453500 Sobic004G313500--Sobic001G453500 Sobic008G101900--Sobic006G274100 Sobic008G058000 Sobic008G058000 Sobic008G101900--Sobic008G058000 Sobic008G101900--Sobic003G223000 Sobic006G193500 Sobic006G193500 Sobic008G101900--Sobic006G193500 Sobic001G371700 Sobic001G371700 Sobic008G101900--Sobic001G371700 Sobic001G395200 Sobic001G395200 Sobic008G101900--Sobic001G395200 Sobic001G199500 Sobic001G199500 Sobic008G101900--Sobic001G199500 Sobic002G272400 Sobic002G272400 Sobic008G101900--Sobic002G272400 Sobic004G354000 Sobic004G354000 Sobic008G101900--Sobic004G354000 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic003G425100 Sobic003G425100 Sobic009G163600--Sobic003G425100 Sobic003G436600 Sobic003G436600 Sobic009G163600--Sobic003G436600 Sobic009G163600--Sobic002G112600 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic008G163500 Sobic008G163500 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic009G163600--Sobic007G059700 Sobic009G163600--Sobic006G140400 Sobic003G333700 Sobic003G333700 Sobic003G223000--Sobic003G333700 Sobic002G078000 Sobic002G078000 Sobic003G223000--Sobic002G078000 Sobic003G223000--Sobic008G101900 Sobic009G002900 Sobic009G002900 Sobic003G223000--Sobic009G002900 Sobic003G223000--Sobic009G177200 Sobic009G231100 Sobic009G231100 Sobic003G223000--Sobic009G231100 Sobic001G165801 Sobic001G165801 Sobic003G223000--Sobic001G165801 Sobic001G104300 Sobic001G104300 Sobic003G223000--Sobic001G104300 Sobic003G223000--Sobic002G272400 Sobic006G274100--Sobic008G101900 Sobic006G274100--Sobic006G140400 Sobic006G274100--Sobic010G032300 Sobic002G380100 Sobic002G380100 Sobic006G274100--Sobic002G380100 Sobic006G274100--Sobic004G354000 Sobic004G119400 Sobic004G119400 Sobic006G274100--Sobic004G119400 Sobic006G274100--Sobic004G027400 Sobic003G259600 Sobic003G259600 Sobic006G274100--Sobic003G259600 Sobic009G066400 Sobic009G066400 Sobic006G274100--Sobic009G066400 Sobic001G040600 Sobic001G040600 Sobic010G099300--Sobic001G040600 Sobic007G182600 Sobic007G182600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic004G342300 Sobic004G342300 Sobic010G032300--Sobic004G342300 Sobic010G032300--Sobic006G140400 Sobic010G032300--Sobic006G274100 Sobic010G032300--Sobic010G224700 Sobic006G059500 Sobic006G059500 Sobic010G032300--Sobic006G059500 Sobic002G132600 Sobic002G132600 Sobic010G032300--Sobic002G132600 Sobic009G211200 Sobic009G211200 Sobic010G032300--Sobic009G211200 Sobic010G032300--Sobic003G259600 Sobic005G028300 Sobic005G028300 Sobic010G032300--Sobic005G028300 Sobic001G537400 Sobic001G537400 Sobic009G177200--Sobic001G537400 Sobic009G177200--Sobic009G002900 Sobic009G177200--Sobic001G199500 Sobic009G177200--Sobic001G395200 Sobic008G113300 Sobic008G113300 Sobic009G177200--Sobic008G113300 Sobic008G045000 Sobic008G045000 Sobic009G177200--Sobic008G045000 Sobic009G177200--Sobic003G223000 Sobic009G177200--Sobic006G140400 Sobic001G425700 Sobic001G425700 Sobic009G177200--Sobic001G425700
Octagon: transcription factors


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