Gene annotation
Transcriptome id Sobic.005G187400.2
Synonym Sb05g024500
Functional annotation A49-like RNA polymerase I associated factor family protein, expressed
UniProt A0A1Z5RJB7
Pfam PF06870
Panther DB PTHR14440
NCBI CDD KOG4183; RNA polymerase I 49 kDa subunit
KEGG Orthology K03005; RPA49, DNA-directed RNA polymerase I subunit RPA49
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G13940 : DNA binding;DNA-directed RNA polymerases
RAP-DB (Rice) LOC_Os11g40090.2 : A49-like RNA polymerase I associated factor family protein, expressed
MaizeGDB (Corn) Zm00025a029349
Brachypodium KQJ87822
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G187400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
2 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
3 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
4 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
5 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
6 Sobic.004G067400 expressed protein -
7 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
8 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
9 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
10 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
11 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
12 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
13 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
14 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
15 Sobic.004G020100 division protein, putative, expressed -
16 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
17 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
18 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
19 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
20 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B


Gene co-expression network
sample Sobic005G187400 Sobic005G187400 Sobic001G423300 Sobic001G423300 Sobic005G187400--Sobic001G423300 Sobic009G113100 Sobic009G113100 Sobic005G187400--Sobic009G113100 Sobic001G373000 Sobic001G373000 Sobic005G187400--Sobic001G373000 Sobic002G005000 Sobic002G005000 Sobic005G187400--Sobic002G005000 Sobic001G230500 Sobic001G230500 Sobic005G187400--Sobic001G230500 Sobic004G067400 Sobic004G067400 Sobic005G187400--Sobic004G067400 Sobic003G161800 Sobic003G161800 Sobic005G187400--Sobic003G161800 Sobic001G334100 Sobic001G334100 Sobic005G187400--Sobic001G334100 Sobic001G115500 Sobic001G115500 Sobic005G187400--Sobic001G115500 Sobic001G423300--Sobic005G187400 Sobic001G423300--Sobic009G113100 Sobic001G462401 Sobic001G462401 Sobic001G423300--Sobic001G462401 Sobic009G254000 Sobic009G254000 Sobic001G423300--Sobic009G254000 Sobic010G207400 Sobic010G207400 Sobic001G423300--Sobic010G207400 Sobic004G155800 Sobic004G155800 Sobic001G423300--Sobic004G155800 Sobic008G179800 Sobic008G179800 Sobic001G423300--Sobic008G179800 Sobic006G061100 Sobic006G061100 Sobic001G423300--Sobic006G061100 Sobic004G075700 Sobic004G075700 Sobic001G423300--Sobic004G075700 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic009G113100--Sobic006G061100 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic002G005000--Sobic001G373000 Sobic010G186600 Sobic010G186600 Sobic002G005000--Sobic010G186600 Sobic001G291800 Sobic001G291800 Sobic002G005000--Sobic001G291800 Sobic001G023800 Sobic001G023800 Sobic002G005000--Sobic001G023800 Sobic001G052400 Sobic001G052400 Sobic002G005000--Sobic001G052400 Sobic004G307500 Sobic004G307500 Sobic002G005000--Sobic004G307500 Sobic008G147200 Sobic008G147200 Sobic002G005000--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic002G005000--Sobic004G340400 Sobic002G005000--Sobic001G013300 Sobic003G433500 Sobic003G433500 Sobic001G230500--Sobic003G433500 Sobic001G168900 Sobic001G168900 Sobic001G230500--Sobic001G168900 Sobic005G046900 Sobic005G046900 Sobic001G230500--Sobic005G046900 Sobic009G195200 Sobic009G195200 Sobic001G230500--Sobic009G195200 Sobic006G120800 Sobic006G120800 Sobic001G230500--Sobic006G120800 Sobic005G072400 Sobic005G072400 Sobic001G230500--Sobic005G072400 Sobic003G427100 Sobic003G427100 Sobic001G230500--Sobic003G427100 Sobic001G230500--Sobic007G187600 Sobic001G038100 Sobic001G038100 Sobic001G230500--Sobic001G038100 Sobic001G335500 Sobic001G335500 Sobic004G067400--Sobic001G335500 Sobic004G067400--Sobic001G334100 Sobic004G067400--Sobic006G120800 Sobic002G142700 Sobic002G142700 Sobic004G067400--Sobic002G142700 Sobic003G253400 Sobic003G253400 Sobic004G067400--Sobic003G253400 Sobic002G408600 Sobic002G408600 Sobic004G067400--Sobic002G408600 Sobic009G258400 Sobic009G258400 Sobic004G067400--Sobic009G258400 Sobic009G036200 Sobic009G036200 Sobic004G067400--Sobic009G036200 Sobic010G215900 Sobic010G215900 Sobic004G067400--Sobic010G215900 Sobic002G254800 Sobic002G254800 Sobic003G161800--Sobic002G254800 Sobic003G161800--Sobic001G373000 Sobic009G030400 Sobic009G030400 Sobic003G161800--Sobic009G030400 Sobic006G179400 Sobic006G179400 Sobic003G161800--Sobic006G179400 Sobic003G180100 Sobic003G180100 Sobic003G161800--Sobic003G180100 Sobic010G236200 Sobic010G236200 Sobic003G161800--Sobic010G236200 Sobic005G030100 Sobic005G030100 Sobic003G161800--Sobic005G030100 Sobic003G161800--Sobic009G113100 Sobic003G161800--Sobic001G115500 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G115500--Sobic001G373000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.