Gene annotation
Transcriptome id Sobic.003G433300.2,Sobic.003G433300.1
Synonym Sb03g046470, ATMLH1, MLH1
Functional annotation DNA mismatch repair protein Mlh1, putative, expressed
UniProt C5XIK7 , A0A097PJQ1 , A0A1W0W1J0
Pfam PF13589 PF01119 PF16413
Panther DB PTHR10073 PTHR10073:SF40
NCBI CDD -
KEGG Orthology K08734; DNA mismatch repair protein MLH1
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G09140 : MUTL-homologue 1
RAP-DB (Rice) LOC_Os01g72880.1 : DNA mismatch repair protein Mlh1, putative, expressed
MaizeGDB (Corn) Zm00025a031805 , Zm00025a039082
Brachypodium KQK11641 , KQK11642 , KQK00128 , KQK00129 , PNT73628 , PNT73627
Barley HORVU3Hr1G110480.13 , HORVU3Hr1G110480.12 , HORVU3Hr1G110480.10 , HORVU3Hr1G110480.14 , HORVU3Hr1G110480.9 , HORVU3Hr1G110480.8 , HORVU3Hr1G110480.3 , HORVU3Hr1G110480.2 , HORVU3Hr1G110480.1 , HORVU3Hr1G110480.7 , HORVU3Hr1G110480.6 , HORVU3Hr1G110480.5 , HORVU3Hr1G110480.4 , HORVU3Hr1G110240.5 , HORVU3Hr1G110240.3 , HORVU3Hr1G110240.2 , HORVU3Hr1G110240.4 , HORVU3Hr1G110240.6 , HORVU7Hr1G067180.2 , HORVU7Hr1G067180.1 , HORVU4Hr1G034240.2 , HORVU4Hr1G034240.1
Wheat TraesCS3D02G507500 , TraesCS3D02G507500 , TraesCS3D02G507800 , TraesCS7A02G140800 , TraesCS7A02G140800 , TraesCS3A02G500600 , TraesCS3B02G564100 , TraesCS3B02G564100 , TraesCS3B02G564100
Populus -


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cDNA sequences
Sobic.003G433300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
2 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
3 Sobic.001G098400 expressed protein K16278: E3 ubiquitin-protein ligase HOS1
4 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
5 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
6 Sobic.006G125500 expressed protein -
7 Sobic.005G045700 PHD-finger family protein, expressed -
8 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
9 Sobic.010G264900 OsFBX79 - F-box domain containing protein, expressed -
10 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
11 Sobic.003G214700 transcriptional corepressor LEUNIG, putative, expressed -
12 Sobic.006G245900 FAR1 family protein, expressed -
13 Sobic.004G040200 CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
14 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
15 Sobic.007G100500 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
17 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.002G127900 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
19 Sobic.003G378100 expressed protein K04730: interleukin-1 receptor-associated kinase 1
20 Sobic.001G125500 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2


Gene co-expression network
sample Sobic003G433300 Sobic003G433300 Sobic003G308500 Sobic003G308500 Sobic003G433300--Sobic003G308500 Sobic007G075800 Sobic007G075800 Sobic003G433300--Sobic007G075800 Sobic001G098400 Sobic001G098400 Sobic003G433300--Sobic001G098400 Sobic002G371600 Sobic002G371600 Sobic003G433300--Sobic002G371600 Sobic004G031300 Sobic004G031300 Sobic003G433300--Sobic004G031300 Sobic006G125500 Sobic006G125500 Sobic003G433300--Sobic006G125500 Sobic005G045700 Sobic005G045700 Sobic003G433300--Sobic005G045700 Sobic002G252100 Sobic002G252100 Sobic003G433300--Sobic002G252100 Sobic010G264900 Sobic010G264900 Sobic003G433300--Sobic010G264900 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic002G031700 Sobic002G031700 Sobic007G075800--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic004G030800 Sobic004G030800 Sobic007G075800--Sobic004G030800 Sobic008G165900 Sobic008G165900 Sobic007G075800--Sobic008G165900 Sobic006G128400 Sobic006G128400 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic001G098400--Sobic003G308500 Sobic001G098400--Sobic006G125500 Sobic001G098400--Sobic002G252100 Sobic001G098400--Sobic002G371600 Sobic001G346900 Sobic001G346900 Sobic001G098400--Sobic001G346900 Sobic003G309050 Sobic003G309050 Sobic001G098400--Sobic003G309050 Sobic001G004100 Sobic001G004100 Sobic001G098400--Sobic001G004100 Sobic004G006600 Sobic004G006600 Sobic001G098400--Sobic004G006600 Sobic001G098400--Sobic003G433300 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G160700 Sobic002G160700 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic004G031300--Sobic001G004100 Sobic004G031300--Sobic006G245900 Sobic006G191200 Sobic006G191200 Sobic004G031300--Sobic006G191200 Sobic005G000300 Sobic005G000300 Sobic004G031300--Sobic005G000300 Sobic004G031300--Sobic006G125500 Sobic002G296400 Sobic002G296400 Sobic004G031300--Sobic002G296400 Sobic004G031300--Sobic006G002800 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic006G125500--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G125500--Sobic004G224600 Sobic006G125500--Sobic006G002800 Sobic006G125500--Sobic003G146600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic007G155500 Sobic007G155500 Sobic006G125500--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic006G125500--Sobic005G010900 Sobic002G127900 Sobic002G127900 Sobic005G045700--Sobic002G127900 Sobic007G053100 Sobic007G053100 Sobic005G045700--Sobic007G053100 Sobic002G266300 Sobic002G266300 Sobic005G045700--Sobic002G266300 Sobic002G054400 Sobic002G054400 Sobic005G045700--Sobic002G054400 Sobic003G368901 Sobic003G368901 Sobic005G045700--Sobic003G368901 Sobic001G125300 Sobic001G125300 Sobic005G045700--Sobic001G125300 Sobic009G012600 Sobic009G012600 Sobic005G045700--Sobic009G012600 Sobic008G191850 Sobic008G191850 Sobic005G045700--Sobic008G191850 Sobic006G262501 Sobic006G262501 Sobic005G045700--Sobic006G262501 Sobic002G252100--Sobic006G245900 Sobic003G123100 Sobic003G123100 Sobic002G252100--Sobic003G123100 Sobic001G239800 Sobic001G239800 Sobic002G252100--Sobic001G239800 Sobic002G252100--Sobic001G346900 Sobic002G252100--Sobic002G371600 Sobic006G270600 Sobic006G270600 Sobic002G252100--Sobic006G270600 Sobic002G252100--Sobic001G098400 Sobic004G315500 Sobic004G315500 Sobic002G252100--Sobic004G315500 Sobic007G014800 Sobic007G014800 Sobic002G252100--Sobic007G014800 Sobic010G264900--Sobic005G045700 Sobic010G264900--Sobic002G127900 Sobic010G264900--Sobic003G368901 Sobic004G010500 Sobic004G010500 Sobic010G264900--Sobic004G010500 Sobic010G264900--Sobic006G262501 Sobic008G165266 Sobic008G165266 Sobic010G264900--Sobic008G165266 Sobic010G003900 Sobic010G003900 Sobic010G264900--Sobic010G003900 Sobic009G224300 Sobic009G224300 Sobic010G264900--Sobic009G224300 Sobic009G155900 Sobic009G155900 Sobic010G264900--Sobic009G155900
Octagon: transcription factors


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