Gene annotation
Transcriptome id Sobic.006G029100.3,Sobic.006G029100.1,Sobic.006G029100.2
Synonym ATARP9, ARP9, Sb06g003010
Functional annotation actin, putative, expressed
UniProt A0A1Z5RBV6 , C5YD58 , A0A1Z5RCA9
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF13
NCBI CDD KOG0797; Actin-related protein
KEGG Orthology K11673; ACTR8, ARP8, actin-related protein 8
Gene Ontology GO:0006338; chromatin remodeling


Orthologs (automatic annotation)
TAIR AT5G43500 : actin-related protein 9
RAP-DB (Rice) LOC_Os03g61970.1,LOC_Os10g36650.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a012513
Brachypodium KQJ81447 , KQJ81449 , KQJ81448 , KQJ81450
Barley HORVU2Hr1G004460.8 , HORVU2Hr1G004460.9 , HORVU2Hr1G004460.3 , HORVU2Hr1G004460.1 , HORVU2Hr1G004460.4 , HORVU2Hr1G004460.5 , HORVU2Hr1G004460.18 , HORVU2Hr1G004460.19 , HORVU2Hr1G004460.10 , HORVU2Hr1G004460.11 , HORVU2Hr1G004460.12 , HORVU2Hr1G004460.13 , HORVU2Hr1G004460.14 , HORVU2Hr1G004460.15 , HORVU2Hr1G004460.16 , HORVU2Hr1G004460.17 , HORVU2Hr1G004460.21 , HORVU2Hr1G004460.20
Wheat TraesCS2B02G040300 , TraesCS2D02G029100 , TraesCS2D02G029100 , TraesCS2D02G029100 , TraesCS2A02G027000 , TraesCS2A02G027000
Populus -


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cDNA sequences
Sobic.006G029100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
2 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
3 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
4 Sobic.004G141800 expressed protein -
5 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
6 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
7 Sobic.001G373800 MIF4G domain containing protein, putative, expressed K12882: NCBP1, nuclear cap-binding protein subunit 1
8 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
9 Sobic.010G070600 DNA binding protein, putative, expressed -
10 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
11 Sobic.004G356200 expressed protein -
12 Sobic.004G097900 expressed protein -
13 Sobic.008G092800 expressed protein -
14 Sobic.003G309050 - -
15 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
16 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
19 Sobic.006G245900 FAR1 family protein, expressed -
20 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1


Gene co-expression network
sample Sobic006G029100 Sobic006G029100 Sobic002G371600 Sobic002G371600 Sobic006G029100--Sobic002G371600 Sobic002G160700 Sobic002G160700 Sobic006G029100--Sobic002G160700 Sobic002G386600 Sobic002G386600 Sobic006G029100--Sobic002G386600 Sobic004G141800 Sobic004G141800 Sobic006G029100--Sobic004G141800 Sobic003G256800 Sobic003G256800 Sobic006G029100--Sobic003G256800 Sobic003G308500 Sobic003G308500 Sobic006G029100--Sobic003G308500 Sobic001G373800 Sobic001G373800 Sobic006G029100--Sobic001G373800 Sobic001G200200 Sobic001G200200 Sobic006G029100--Sobic001G200200 Sobic010G070600 Sobic010G070600 Sobic006G029100--Sobic010G070600 Sobic002G371600--Sobic001G373800 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic004G356200 Sobic004G356200 Sobic002G371600--Sobic004G356200 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100 Sobic001G151600 Sobic001G151600 Sobic002G160700--Sobic001G151600 Sobic002G160700--Sobic002G371600 Sobic002G160700--Sobic006G029100 Sobic001G248100 Sobic001G248100 Sobic002G160700--Sobic001G248100 Sobic006G265600 Sobic006G265600 Sobic002G160700--Sobic006G265600 Sobic002G199400 Sobic002G199400 Sobic002G160700--Sobic002G199400 Sobic002G408900 Sobic002G408900 Sobic002G160700--Sobic002G408900 Sobic004G030400 Sobic004G030400 Sobic002G160700--Sobic004G030400 Sobic005G115500 Sobic005G115500 Sobic002G160700--Sobic005G115500 Sobic002G386900 Sobic002G386900 Sobic002G386600--Sobic002G386900 Sobic002G386600--Sobic006G029100 Sobic002G386600--Sobic004G141800 Sobic002G386600--Sobic006G265600 Sobic002G398700 Sobic002G398700 Sobic002G386600--Sobic002G398700 Sobic002G386600--Sobic002G160700 Sobic001G085800 Sobic001G085800 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000 Sobic002G430300 Sobic002G430300 Sobic004G141800--Sobic002G430300 Sobic003G405500 Sobic003G405500 Sobic004G141800--Sobic003G405500 Sobic004G236800 Sobic004G236800 Sobic004G141800--Sobic004G236800 Sobic002G227500 Sobic002G227500 Sobic004G141800--Sobic002G227500 Sobic001G030000 Sobic001G030000 Sobic004G141800--Sobic001G030000 Sobic003G143800 Sobic003G143800 Sobic004G141800--Sobic003G143800 Sobic003G312700 Sobic003G312700 Sobic004G141800--Sobic003G312700 Sobic001G035200 Sobic001G035200 Sobic004G141800--Sobic001G035200 Sobic004G141800--Sobic002G386600 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G012000 Sobic003G012000 Sobic003G256800--Sobic003G012000 Sobic003G256800--Sobic006G029100 Sobic002G296400 Sobic002G296400 Sobic003G256800--Sobic002G296400 Sobic002G363800 Sobic002G363800 Sobic003G256800--Sobic002G363800 Sobic001G097900 Sobic001G097900 Sobic003G256800--Sobic001G097900 Sobic003G256800--Sobic002G398700 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic003G308500--Sobic002G371600 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic003G308500--Sobic006G245900 Sobic001G373800--Sobic002G371600 Sobic005G010900 Sobic005G010900 Sobic001G373800--Sobic005G010900 Sobic006G033101 Sobic006G033101 Sobic001G373800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic001G373800--Sobic004G038100 Sobic001G373800--Sobic006G029100 Sobic006G181800 Sobic006G181800 Sobic001G373800--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic001G373800--Sobic001G373000 Sobic001G373800--Sobic001G451300 Sobic009G104900 Sobic009G104900 Sobic001G373800--Sobic009G104900 Sobic001G200200--Sobic004G356200 Sobic005G031000 Sobic005G031000 Sobic001G200200--Sobic005G031000 Sobic001G200200--Sobic002G386900 Sobic001G200200--Sobic002G371600 Sobic001G200200--Sobic004G030400 Sobic001G200200--Sobic006G181800 Sobic006G191200 Sobic006G191200 Sobic001G200200--Sobic006G191200 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800 Sobic003G016500 Sobic003G016500 Sobic010G070600--Sobic003G016500 Sobic002G119600 Sobic002G119600 Sobic010G070600--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic010G070600--Sobic010G139500 Sobic001G087600 Sobic001G087600 Sobic010G070600--Sobic001G087600 Sobic008G140700 Sobic008G140700 Sobic010G070600--Sobic008G140700 Sobic010G070600--Sobic006G029100 Sobic010G034100 Sobic010G034100 Sobic010G070600--Sobic010G034100 Sobic003G241700 Sobic003G241700 Sobic010G070600--Sobic003G241700 Sobic010G070600--Sobic003G405500
Octagon: transcription factors


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