Gene annotation
Transcriptome id Sobic.008G151432.1
Synonym -
Functional annotation -
UniProt A0A1Z5R7D4
Pfam PF09808
Panther DB PTHR15131
NCBI CDD -
KEGG Orthology K15208; snRNA-activating protein complex subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53270 : Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
RAP-DB (Rice) LOC_Os10g35130.1 : expressed protein
MaizeGDB (Corn) Zm00025a043776 , Zm00025a004548
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G123300 AAA-type ATPase family protein, putative, expressed -
2 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
3 Sobic.010G003900 arginine N-methyltransferase 7, putative, expressed K11438: type III protein arginine methyltransferase
4 Sobic.002G112600 zinc finger family protein, putative, expressed -
5 Sobic.003G122800 translin, putative, expressed -
6 Sobic.008G097600 cyclin-T1-4, putative, expressed K15188: cyclin T
7 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
8 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
9 Sobic.001G165801 - -
10 Sobic.006G017800 ELM2 domain containing protein, putative, expressed -
11 Sobic.003G427200 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
K12486: stromal membrane-associated protein
12 Sobic.006G125500 expressed protein -
13 Sobic.010G264900 OsFBX79 - F-box domain containing protein, expressed -
14 Sobic.006G181800 gamma-tubulin complex component 6, putative, expressed K16573: TUBGCP6, gamma-tubulin complex component 6
15 Sobic.006G029100 actin, putative, expressed K11673: ACTR8, ARP8, actin-related protein 8
16 Sobic.004G356200 expressed protein -
17 Sobic.003G433300 DNA mismatch repair protein Mlh1, putative, expressed K08734: DNA mismatch repair protein MLH1
18 Sobic.006G013100 expressed protein K13205: AAR2, A1 cistron-splicing factor AAR2
19 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
20 Sobic.006G245900 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic008G151432 Sobic008G151432 Sobic008G123300 Sobic008G123300 Sobic008G151432--Sobic008G123300 Sobic001G200200 Sobic001G200200 Sobic008G151432--Sobic001G200200 Sobic010G003900 Sobic010G003900 Sobic008G151432--Sobic010G003900 Sobic002G112600 Sobic002G112600 Sobic008G151432--Sobic002G112600 Sobic003G122800 Sobic003G122800 Sobic008G151432--Sobic003G122800 Sobic008G097600 Sobic008G097600 Sobic008G151432--Sobic008G097600 Sobic003G256800 Sobic003G256800 Sobic008G151432--Sobic003G256800 Sobic004G031300 Sobic004G031300 Sobic008G151432--Sobic004G031300 Sobic001G165801 Sobic001G165801 Sobic008G151432--Sobic001G165801 Sobic002G239601 Sobic002G239601 Sobic008G123300--Sobic002G239601 Sobic008G123300--Sobic002G112600 Sobic008G123300--Sobic001G200200 Sobic010G279300 Sobic010G279300 Sobic008G123300--Sobic010G279300 Sobic004G356200 Sobic004G356200 Sobic008G123300--Sobic004G356200 Sobic003G135500 Sobic003G135500 Sobic008G123300--Sobic003G135500 Sobic008G123300--Sobic008G151432 Sobic002G137601 Sobic002G137601 Sobic008G123300--Sobic002G137601 Sobic002G386900 Sobic002G386900 Sobic008G123300--Sobic002G386900 Sobic001G200200--Sobic004G356200 Sobic005G031000 Sobic005G031000 Sobic001G200200--Sobic005G031000 Sobic001G200200--Sobic002G386900 Sobic002G371600 Sobic002G371600 Sobic001G200200--Sobic002G371600 Sobic004G030400 Sobic004G030400 Sobic001G200200--Sobic004G030400 Sobic006G181800 Sobic006G181800 Sobic001G200200--Sobic006G181800 Sobic006G191200 Sobic006G191200 Sobic001G200200--Sobic006G191200 Sobic006G029100 Sobic006G029100 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800 Sobic006G125500 Sobic006G125500 Sobic010G003900--Sobic006G125500 Sobic006G237000 Sobic006G237000 Sobic010G003900--Sobic006G237000 Sobic010G003900--Sobic004G031300 Sobic005G098800 Sobic005G098800 Sobic010G003900--Sobic005G098800 Sobic006G140400 Sobic006G140400 Sobic010G003900--Sobic006G140400 Sobic010G003900--Sobic001G200200 Sobic001G004100 Sobic001G004100 Sobic010G003900--Sobic001G004100 Sobic009G246500 Sobic009G246500 Sobic010G003900--Sobic009G246500 Sobic005G000300 Sobic005G000300 Sobic010G003900--Sobic005G000300 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic004G215900 Sobic004G215900 Sobic002G112600--Sobic004G215900 Sobic010G224700 Sobic010G224700 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic002G112600--Sobic005G000300 Sobic004G027400 Sobic004G027400 Sobic002G112600--Sobic004G027400 Sobic009G163600 Sobic009G163600 Sobic002G112600--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic002G112600--Sobic001G453500 Sobic004G027300 Sobic004G027300 Sobic002G112600--Sobic004G027300 Sobic002G367200 Sobic002G367200 Sobic003G122800--Sobic002G367200 Sobic008G162100 Sobic008G162100 Sobic003G122800--Sobic008G162100 Sobic009G028100 Sobic009G028100 Sobic003G122800--Sobic009G028100 Sobic003G129300 Sobic003G129300 Sobic003G122800--Sobic003G129300 Sobic002G095300 Sobic002G095300 Sobic003G122800--Sobic002G095300 Sobic003G326500 Sobic003G326500 Sobic003G122800--Sobic003G326500 Sobic003G102700 Sobic003G102700 Sobic003G122800--Sobic003G102700 Sobic003G119900 Sobic003G119900 Sobic003G122800--Sobic003G119900 Sobic007G082000 Sobic007G082000 Sobic003G122800--Sobic007G082000 Sobic002G292800 Sobic002G292800 Sobic008G097600--Sobic002G292800 Sobic010G155600 Sobic010G155600 Sobic008G097600--Sobic010G155600 Sobic003G413100 Sobic003G413100 Sobic008G097600--Sobic003G413100 Sobic001G032200 Sobic001G032200 Sobic008G097600--Sobic001G032200 Sobic009G020100 Sobic009G020100 Sobic008G097600--Sobic009G020100 Sobic006G245900 Sobic006G245900 Sobic008G097600--Sobic006G245900 Sobic007G211800 Sobic007G211800 Sobic008G097600--Sobic007G211800 Sobic001G258900 Sobic001G258900 Sobic008G097600--Sobic001G258900 Sobic009G107300 Sobic009G107300 Sobic008G097600--Sobic009G107300 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic002G227500 Sobic002G227500 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G012000 Sobic003G012000 Sobic003G256800--Sobic003G012000 Sobic003G256800--Sobic006G029100 Sobic002G296400 Sobic002G296400 Sobic003G256800--Sobic002G296400 Sobic002G363800 Sobic002G363800 Sobic003G256800--Sobic002G363800 Sobic001G097900 Sobic001G097900 Sobic003G256800--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic003G256800--Sobic002G398700 Sobic004G031300--Sobic001G004100 Sobic004G031300--Sobic006G245900 Sobic004G031300--Sobic006G191200 Sobic004G031300--Sobic005G000300 Sobic004G031300--Sobic006G125500 Sobic004G031300--Sobic002G296400 Sobic006G002800 Sobic006G002800 Sobic004G031300--Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic003G223000 Sobic003G223000 Sobic001G165801--Sobic003G223000 Sobic003G311600 Sobic003G311600 Sobic001G165801--Sobic003G311600 Sobic003G333700 Sobic003G333700 Sobic001G165801--Sobic003G333700 Sobic001G013900 Sobic001G013900 Sobic001G165801--Sobic001G013900 Sobic003G336500 Sobic003G336500 Sobic001G165801--Sobic003G336500 Sobic007G225700 Sobic007G225700 Sobic001G165801--Sobic007G225700 Sobic007G070000 Sobic007G070000 Sobic001G165801--Sobic007G070000 Sobic001G290600 Sobic001G290600 Sobic001G165801--Sobic001G290600 Sobic008G100400 Sobic008G100400 Sobic001G165801--Sobic008G100400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.