Gene annotation
Transcriptome id Sobic.001G165801.1
Synonym -
Functional annotation -
UniProt A0A1Z5S5Y8
Pfam -
Panther DB PTHR33304:SF7 PTHR33304
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17850 : -
RAP-DB (Rice) LOC_Os11g06130.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a007397 , Zm00025a007398 , Zm00025a017300
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.003G311600 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
3 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
4 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
5 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
6 Sobic.007G225700 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
7 Sobic.007G070000 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
8 Sobic.001G290600 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
9 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
11 Sobic.002G272400 expressed protein -
12 Sobic.003G104100 expressed protein -
13 Sobic.003G399100 pentatricopeptide, putative, expressed -
14 Sobic.008G097600 cyclin-T1-4, putative, expressed K15188: cyclin T
15 Sobic.008G151432 - K15208: snRNA-activating protein complex subunit 1
16 Sobic.010G003900 arginine N-methyltransferase 7, putative, expressed K11438: type III protein arginine methyltransferase
17 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
18 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
19 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
20 Sobic.003G182100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase


Gene co-expression network
sample Sobic001G165801 Sobic001G165801 Sobic003G223000 Sobic003G223000 Sobic001G165801--Sobic003G223000 Sobic003G311600 Sobic003G311600 Sobic001G165801--Sobic003G311600 Sobic003G333700 Sobic003G333700 Sobic001G165801--Sobic003G333700 Sobic001G013900 Sobic001G013900 Sobic001G165801--Sobic001G013900 Sobic003G336500 Sobic003G336500 Sobic001G165801--Sobic003G336500 Sobic007G225700 Sobic007G225700 Sobic001G165801--Sobic007G225700 Sobic007G070000 Sobic007G070000 Sobic001G165801--Sobic007G070000 Sobic001G290600 Sobic001G290600 Sobic001G165801--Sobic001G290600 Sobic008G100400 Sobic008G100400 Sobic001G165801--Sobic008G100400 Sobic003G223000--Sobic003G333700 Sobic002G078000 Sobic002G078000 Sobic003G223000--Sobic002G078000 Sobic008G101900 Sobic008G101900 Sobic003G223000--Sobic008G101900 Sobic009G002900 Sobic009G002900 Sobic003G223000--Sobic009G002900 Sobic009G177200 Sobic009G177200 Sobic003G223000--Sobic009G177200 Sobic009G231100 Sobic009G231100 Sobic003G223000--Sobic009G231100 Sobic003G223000--Sobic001G165801 Sobic001G104300 Sobic001G104300 Sobic003G223000--Sobic001G104300 Sobic002G272400 Sobic002G272400 Sobic003G223000--Sobic002G272400 Sobic003G311600--Sobic007G070000 Sobic008G088842 Sobic008G088842 Sobic003G311600--Sobic008G088842 Sobic003G104100 Sobic003G104100 Sobic003G311600--Sobic003G104100 Sobic003G311600--Sobic001G165801 Sobic006G236000 Sobic006G236000 Sobic003G311600--Sobic006G236000 Sobic002G340200 Sobic002G340200 Sobic003G311600--Sobic002G340200 Sobic007G094500 Sobic007G094500 Sobic003G311600--Sobic007G094500 Sobic003G135500 Sobic003G135500 Sobic003G311600--Sobic003G135500 Sobic002G162500 Sobic002G162500 Sobic003G311600--Sobic002G162500 Sobic003G333700--Sobic002G078000 Sobic003G333700--Sobic003G223000 Sobic003G333700--Sobic001G013900 Sobic003G333700--Sobic001G104300 Sobic004G109000 Sobic004G109000 Sobic003G333700--Sobic004G109000 Sobic001G164500 Sobic001G164500 Sobic003G333700--Sobic001G164500 Sobic003G333700--Sobic001G165801 Sobic001G188600 Sobic001G188600 Sobic003G333700--Sobic001G188600 Sobic001G379100 Sobic001G379100 Sobic003G333700--Sobic001G379100 Sobic002G360200 Sobic002G360200 Sobic001G013900--Sobic002G360200 Sobic001G013900--Sobic002G078000 Sobic001G013900--Sobic003G333700 Sobic001G013900--Sobic002G272400 Sobic001G013900--Sobic001G104300 Sobic001G013900--Sobic001G188600 Sobic001G172300 Sobic001G172300 Sobic001G013900--Sobic001G172300 Sobic004G338300 Sobic004G338300 Sobic001G013900--Sobic004G338300 Sobic008G058000 Sobic008G058000 Sobic001G013900--Sobic008G058000 Sobic008G068100 Sobic008G068100 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic009G191500 Sobic009G191500 Sobic003G336500--Sobic009G191500 Sobic007G060600 Sobic007G060600 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic001G483800 Sobic001G483800 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic003G336500--Sobic008G100400 Sobic002G256800 Sobic002G256800 Sobic007G225700--Sobic002G256800 Sobic002G155100 Sobic002G155100 Sobic007G225700--Sobic002G155100 Sobic005G102800 Sobic005G102800 Sobic007G225700--Sobic005G102800 Sobic010G155600 Sobic010G155600 Sobic007G225700--Sobic010G155600 Sobic006G193500 Sobic006G193500 Sobic007G225700--Sobic006G193500 Sobic003G102700 Sobic003G102700 Sobic007G225700--Sobic003G102700 Sobic007G225700--Sobic003G223000 Sobic006G237000 Sobic006G237000 Sobic007G225700--Sobic006G237000 Sobic007G225700--Sobic008G100400 Sobic007G070000--Sobic003G311600 Sobic007G070000--Sobic002G340200 Sobic010G134500 Sobic010G134500 Sobic007G070000--Sobic010G134500 Sobic007G070000--Sobic008G088842 Sobic007G070000--Sobic003G223000 Sobic001G300900 Sobic001G300900 Sobic007G070000--Sobic001G300900 Sobic010G091200 Sobic010G091200 Sobic007G070000--Sobic010G091200 Sobic004G354000 Sobic004G354000 Sobic007G070000--Sobic004G354000 Sobic006G275000 Sobic006G275000 Sobic007G070000--Sobic006G275000 Sobic007G132200 Sobic007G132200 Sobic001G290600--Sobic007G132200 Sobic003G418200 Sobic003G418200 Sobic001G290600--Sobic003G418200 Sobic008G097600 Sobic008G097600 Sobic001G290600--Sobic008G097600 Sobic003G309300 Sobic003G309300 Sobic001G290600--Sobic003G309300 Sobic001G283300 Sobic001G283300 Sobic001G290600--Sobic001G283300 Sobic001G434700 Sobic001G434700 Sobic001G290600--Sobic001G434700 Sobic007G100500 Sobic007G100500 Sobic001G290600--Sobic007G100500 Sobic003G252700 Sobic003G252700 Sobic001G290600--Sobic003G252700 Sobic010G130300 Sobic010G130300 Sobic001G290600--Sobic010G130300 Sobic007G182600 Sobic007G182600 Sobic008G100400--Sobic007G182600 Sobic008G100400--Sobic001G040600 Sobic008G100400--Sobic003G336500 Sobic010G157700 Sobic010G157700 Sobic008G100400--Sobic010G157700 Sobic008G147400 Sobic008G147400 Sobic008G100400--Sobic008G147400 Sobic009G096100 Sobic009G096100 Sobic008G100400--Sobic009G096100 Sobic001G081300 Sobic001G081300 Sobic008G100400--Sobic001G081300 Sobic010G099300 Sobic010G099300 Sobic008G100400--Sobic010G099300 Sobic009G148200 Sobic009G148200 Sobic008G100400--Sobic009G148200
Octagon: transcription factors


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