Gene annotation
Transcriptome id Sobic.003G182100.4,Sobic.003G182100.3,Sobic.003G182100.2,Sobic.003G182100.1
Synonym Sb03g024010
Functional annotation tRNA methyltransferase, putative, expressed
UniProt A0A1W0VXW8 , C5XMV7 , A0A1W0VXV1
Pfam PF02390
Panther DB PTHR23417 PTHR23417:SF18
NCBI CDD KOG3115; Methyltransferase-like protein
KEGG Orthology K03439; trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
Gene Ontology GO:0008176; tRNA (guanine-N7-)-methyltransferase activity GO:0006400tRNA modification


Orthologs (automatic annotation)
TAIR AT5G17660 : tRNA (guanine-N-7) methyltransferase
RAP-DB (Rice) LOC_Os01g35170.1 : tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a000758
Brachypodium KQK08215 , KQK08216 , KQK08217
Barley HORVU2Hr1G103560.11 , HORVU2Hr1G103560.10 , HORVU2Hr1G103560.13 , HORVU2Hr1G103560.9 , HORVU2Hr1G103560.8 , HORVU2Hr1G103560.3 , HORVU2Hr1G103560.2 , HORVU2Hr1G103560.5 , HORVU2Hr1G103560.4 , HORVU2Hr1G103560.7 , HORVU2Hr1G103560.6
Wheat TraesCS2B02G486900 , TraesCS2A02G465400 , TraesCS2A02G465400 , TraesCS2D02G465800 , TraesCS2D02G465800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G111800 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
2 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
3 Sobic.003G273300 single myb histone, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
5 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
6 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
7 Sobic.006G146900 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.001G436600 pentatricopeptide, putative, expressed -
9 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
10 Sobic.005G078200 OsFBX400 - F-box domain containing protein, expressed -
11 Sobic.006G193500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
13 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
14 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
15 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
16 Sobic.002G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.001G027100 FEN1A - Putative flap endonuclease protein, expressed K04799: FEN1, flap endonuclease-1
20 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G182100 Sobic003G182100 Sobic002G111800 Sobic002G111800 Sobic003G182100--Sobic002G111800 Sobic010G099300 Sobic010G099300 Sobic003G182100--Sobic010G099300 Sobic003G273300 Sobic003G273300 Sobic003G182100--Sobic003G273300 Sobic007G182600 Sobic007G182600 Sobic003G182100--Sobic007G182600 Sobic008G101900 Sobic008G101900 Sobic003G182100--Sobic008G101900 Sobic004G354000 Sobic004G354000 Sobic003G182100--Sobic004G354000 Sobic006G146900 Sobic006G146900 Sobic003G182100--Sobic006G146900 Sobic001G436600 Sobic001G436600 Sobic003G182100--Sobic001G436600 Sobic001G013900 Sobic001G013900 Sobic003G182100--Sobic001G013900 Sobic002G235600 Sobic002G235600 Sobic002G111800--Sobic002G235600 Sobic003G399100 Sobic003G399100 Sobic002G111800--Sobic003G399100 Sobic001G027100 Sobic001G027100 Sobic002G111800--Sobic001G027100 Sobic009G251000 Sobic009G251000 Sobic002G111800--Sobic009G251000 Sobic008G038600 Sobic008G038600 Sobic002G111800--Sobic008G038600 Sobic001G025800 Sobic001G025800 Sobic002G111800--Sobic001G025800 Sobic007G026200 Sobic007G026200 Sobic002G111800--Sobic007G026200 Sobic002G111800--Sobic003G182100 Sobic002G189600 Sobic002G189600 Sobic002G111800--Sobic002G189600 Sobic001G040600 Sobic001G040600 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic001G081300 Sobic001G081300 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic003G273300--Sobic008G101900 Sobic003G273300--Sobic003G182100 Sobic003G218700 Sobic003G218700 Sobic003G273300--Sobic003G218700 Sobic003G273300--Sobic004G354000 Sobic004G128200 Sobic004G128200 Sobic003G273300--Sobic004G128200 Sobic003G273300--Sobic003G399100 Sobic006G208400 Sobic006G208400 Sobic003G273300--Sobic006G208400 Sobic005G111000 Sobic005G111000 Sobic003G273300--Sobic005G111000 Sobic003G425100 Sobic003G425100 Sobic003G273300--Sobic003G425100 Sobic008G100400 Sobic008G100400 Sobic007G182600--Sobic008G100400 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic007G182600--Sobic001G081300 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic006G274100 Sobic006G274100 Sobic008G101900--Sobic006G274100 Sobic008G058000 Sobic008G058000 Sobic008G101900--Sobic008G058000 Sobic003G223000 Sobic003G223000 Sobic008G101900--Sobic003G223000 Sobic006G193500 Sobic006G193500 Sobic008G101900--Sobic006G193500 Sobic001G371700 Sobic001G371700 Sobic008G101900--Sobic001G371700 Sobic001G395200 Sobic001G395200 Sobic008G101900--Sobic001G395200 Sobic001G199500 Sobic001G199500 Sobic008G101900--Sobic001G199500 Sobic002G272400 Sobic002G272400 Sobic008G101900--Sobic002G272400 Sobic008G101900--Sobic004G354000 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic008G017100 Sobic008G017100 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic001G322600 Sobic001G322600 Sobic004G354000--Sobic001G322600 Sobic002G079100 Sobic002G079100 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic002G120200 Sobic002G120200 Sobic006G146900--Sobic002G120200 Sobic002G200500 Sobic002G200500 Sobic006G146900--Sobic002G200500 Sobic002G237700 Sobic002G237700 Sobic006G146900--Sobic002G237700 Sobic006G240300 Sobic006G240300 Sobic006G146900--Sobic006G240300 Sobic006G146900--Sobic003G182100 Sobic001G404000 Sobic001G404000 Sobic006G146900--Sobic001G404000 Sobic001G362400 Sobic001G362400 Sobic006G146900--Sobic001G362400 Sobic001G193900 Sobic001G193900 Sobic006G146900--Sobic001G193900 Sobic009G233600 Sobic009G233600 Sobic006G146900--Sobic009G233600 Sobic004G256900 Sobic004G256900 Sobic001G436600--Sobic004G256900 Sobic006G085900 Sobic006G085900 Sobic001G436600--Sobic006G085900 Sobic006G262800 Sobic006G262800 Sobic001G436600--Sobic006G262800 Sobic009G154900 Sobic009G154900 Sobic001G436600--Sobic009G154900 Sobic004G241000 Sobic004G241000 Sobic001G436600--Sobic004G241000 Sobic006G085800 Sobic006G085800 Sobic001G436600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic001G436600--Sobic010G068900 Sobic004G215600 Sobic004G215600 Sobic001G436600--Sobic004G215600 Sobic006G095000 Sobic006G095000 Sobic001G436600--Sobic006G095000 Sobic002G360200 Sobic002G360200 Sobic001G013900--Sobic002G360200 Sobic002G078000 Sobic002G078000 Sobic001G013900--Sobic002G078000 Sobic003G333700 Sobic003G333700 Sobic001G013900--Sobic003G333700 Sobic001G013900--Sobic002G272400 Sobic001G104300 Sobic001G104300 Sobic001G013900--Sobic001G104300 Sobic001G188600 Sobic001G188600 Sobic001G013900--Sobic001G188600 Sobic001G172300 Sobic001G172300 Sobic001G013900--Sobic001G172300 Sobic004G338300 Sobic004G338300 Sobic001G013900--Sobic004G338300 Sobic001G013900--Sobic008G058000
Octagon: transcription factors


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