Gene annotation
Transcriptome id Sobic.003G273300.1
Synonym Sb03g032530
Functional annotation single myb histone, putative, expressed
UniProt C5XHN5
Pfam PF00249 PF00538
Panther DB PTHR11467 PTHR11467:SF27
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology GO:0006334; nucleosome assembly GO:0005634nucleus GO:0003677DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G72740 : Homeodomain-like/winged-helix DNA-binding family protein
RAP-DB (Rice) LOC_Os01g51154.1 : single myb histone, putative, expressed
MaizeGDB (Corn) Zm00025a027838 , Zm00025a038931
Brachypodium KQK09411 , KQK09410
Barley -
Wheat TraesCS3D02G252400 , TraesCS3D02G252400 , TraesCS3D02G252400 , TraesCS3D02G252400 , TraesCS3D02G252400 , TraesCS3D02G252400 , TraesCS3A02G252000 , TraesCS3A02G252000 , TraesCS3A02G252000 , TraesCS3A02G252000 , TraesCS3A02G252000 , TraesCS3A02G252000 , TraesCS3A02G252000 , TraesCS3B02G281500 , TraesCS3B02G281500 , TraesCS3B02G281500 , TraesCS3B02G281500
Populus -


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cDNA sequences
Sobic.003G273300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
2 Sobic.003G182100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
3 Sobic.003G218700 LSD1 zinc finger domain containing protein, expressed -
4 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
5 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
6 Sobic.003G399100 pentatricopeptide, putative, expressed -
7 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
8 Sobic.005G111000 receptor protein kinase TMK1 precursor, putative, expressed -
9 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
10 Sobic.008G088842 - -
11 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
12 Sobic.006G140600 HEAT repeat family protein, putative, expressed K16578: CLIP-associating protein 1/2
13 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
14 Sobic.002G356600 ZCW7, putative, expressed -
15 Sobic.002G425200 expressed protein -
16 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
17 Sobic.007G163600 expressed protein -
18 Sobic.008G125100 Mur ligase family protein, putative, expressed -
19 Sobic.002G082100 serine/threonine-protein kinase, putative, expressed -
20 Sobic.002G427300 protein phosphotase protein, putative, expressed -


Gene co-expression network
sample Sobic003G273300 Sobic003G273300 Sobic008G101900 Sobic008G101900 Sobic003G273300--Sobic008G101900 Sobic003G182100 Sobic003G182100 Sobic003G273300--Sobic003G182100 Sobic003G218700 Sobic003G218700 Sobic003G273300--Sobic003G218700 Sobic004G354000 Sobic004G354000 Sobic003G273300--Sobic004G354000 Sobic004G128200 Sobic004G128200 Sobic003G273300--Sobic004G128200 Sobic003G399100 Sobic003G399100 Sobic003G273300--Sobic003G399100 Sobic006G208400 Sobic006G208400 Sobic003G273300--Sobic006G208400 Sobic005G111000 Sobic005G111000 Sobic003G273300--Sobic005G111000 Sobic003G425100 Sobic003G425100 Sobic003G273300--Sobic003G425100 Sobic006G274100 Sobic006G274100 Sobic008G101900--Sobic006G274100 Sobic008G058000 Sobic008G058000 Sobic008G101900--Sobic008G058000 Sobic003G223000 Sobic003G223000 Sobic008G101900--Sobic003G223000 Sobic006G193500 Sobic006G193500 Sobic008G101900--Sobic006G193500 Sobic001G371700 Sobic001G371700 Sobic008G101900--Sobic001G371700 Sobic001G395200 Sobic001G395200 Sobic008G101900--Sobic001G395200 Sobic001G199500 Sobic001G199500 Sobic008G101900--Sobic001G199500 Sobic002G272400 Sobic002G272400 Sobic008G101900--Sobic002G272400 Sobic008G101900--Sobic004G354000 Sobic002G111800 Sobic002G111800 Sobic003G182100--Sobic002G111800 Sobic010G099300 Sobic010G099300 Sobic003G182100--Sobic010G099300 Sobic003G182100--Sobic003G273300 Sobic007G182600 Sobic007G182600 Sobic003G182100--Sobic007G182600 Sobic003G182100--Sobic008G101900 Sobic003G182100--Sobic004G354000 Sobic006G146900 Sobic006G146900 Sobic003G182100--Sobic006G146900 Sobic001G436600 Sobic001G436600 Sobic003G182100--Sobic001G436600 Sobic001G013900 Sobic001G013900 Sobic003G182100--Sobic001G013900 Sobic002G079100 Sobic002G079100 Sobic003G218700--Sobic002G079100 Sobic003G218700--Sobic005G111000 Sobic006G280100 Sobic006G280100 Sobic003G218700--Sobic006G280100 Sobic002G234600 Sobic002G234600 Sobic003G218700--Sobic002G234600 Sobic008G017100 Sobic008G017100 Sobic003G218700--Sobic008G017100 Sobic010G262100 Sobic010G262100 Sobic003G218700--Sobic010G262100 Sobic010G138900 Sobic010G138900 Sobic003G218700--Sobic010G138900 Sobic008G088842 Sobic008G088842 Sobic003G218700--Sobic008G088842 Sobic001G134300 Sobic001G134300 Sobic003G218700--Sobic001G134300 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic001G322600 Sobic001G322600 Sobic004G354000--Sobic001G322600 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic001G027100 Sobic001G027100 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic005G199200 Sobic005G199200 Sobic004G128200--Sobic005G199200 Sobic001G367100 Sobic001G367100 Sobic004G128200--Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic004G128200--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic004G128200--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic004G128200--Sobic003G409200 Sobic001G090300 Sobic001G090300 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic004G128200--Sobic008G017100 Sobic008G038600 Sobic008G038600 Sobic003G399100--Sobic008G038600 Sobic003G399100--Sobic004G354000 Sobic009G005400 Sobic009G005400 Sobic003G399100--Sobic009G005400 Sobic002G305100 Sobic002G305100 Sobic003G399100--Sobic002G305100 Sobic007G132200 Sobic007G132200 Sobic003G399100--Sobic007G132200 Sobic003G267500 Sobic003G267500 Sobic003G399100--Sobic003G267500 Sobic006G128400 Sobic006G128400 Sobic003G399100--Sobic006G128400 Sobic003G399100--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic003G399100--Sobic010G224700 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic006G208400--Sobic008G017100 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic005G111000--Sobic003G218700 Sobic005G111000--Sobic006G280100 Sobic007G059600 Sobic007G059600 Sobic005G111000--Sobic007G059600 Sobic005G111000--Sobic008G088842 Sobic005G111000--Sobic002G079100 Sobic002G425200 Sobic002G425200 Sobic005G111000--Sobic002G425200 Sobic003G104100 Sobic003G104100 Sobic005G111000--Sobic003G104100 Sobic009G190200 Sobic009G190200 Sobic005G111000--Sobic009G190200 Sobic009G101000 Sobic009G101000 Sobic005G111000--Sobic009G101000 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic006G198600 Sobic006G198600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700
Octagon: transcription factors


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