Gene annotation
Transcriptome id Sobic.005G111000.1,Sobic.005G111000.2
Synonym Sb05g012530
Functional annotation receptor protein kinase TMK1 precursor, putative, expressed
UniProt C5Y271 , C5Y270
Pfam PF08263 PF13855 PF00069
Panther DB PTHR27001 PTHR27001:SF153
NCBI CDD KOG1187; Serine/threonine protein kinase KOG0984Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G66150 : transmembrane kinase 1
RAP-DB (Rice) LOC_Os11g26130.1 : receptor protein kinase TMK1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a015630 , Zm00025a029704
Brachypodium PNT63659 , PNT63660 , KQJ88573
Barley HORVU4Hr1G044260.2 , HORVU4Hr1G044260.3 , HORVU4Hr1G044260.1
Wheat TraesCS4D02G163300 , TraesCS4A02G147700
Populus -


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cDNA sequences
Sobic.005G111000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G218700 LSD1 zinc finger domain containing protein, expressed -
2 Sobic.006G280100 SET domain containing protein, expressed -
3 Sobic.007G059600 OsBAK1(Ortholog in rice:Yuan et al. (2017))(PubMedID : 31659903)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
4 Sobic.008G088842 - -
5 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
6 Sobic.002G425200 expressed protein -
7 Sobic.003G104100 expressed protein -
8 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
9 Sobic.009G101000 - -
10 Sobic.003G273300 single myb histone, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.003G077500 expressed protein -
12 Sobic.003G177000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
13 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
14 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
15 Sobic.001G395200 cyclin-related protein, putative, expressed -
16 Sobic.001G523700 erythronate-4-phosphate dehydrogenase, putative, expressed -
17 Sobic.009G120400 methyltransferase, putative, expressed -
18 Sobic.003G016500 histone-lysine N-methyltransferase ATX5, putative, expressed -
19 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
20 Sobic.001G047200 carboxyl-terminal peptidase, putative, expressed -


Gene co-expression network
sample Sobic005G111000 Sobic005G111000 Sobic003G218700 Sobic003G218700 Sobic005G111000--Sobic003G218700 Sobic006G280100 Sobic006G280100 Sobic005G111000--Sobic006G280100 Sobic007G059600 Sobic007G059600 Sobic005G111000--Sobic007G059600 Sobic008G088842 Sobic008G088842 Sobic005G111000--Sobic008G088842 Sobic002G079100 Sobic002G079100 Sobic005G111000--Sobic002G079100 Sobic002G425200 Sobic002G425200 Sobic005G111000--Sobic002G425200 Sobic003G104100 Sobic003G104100 Sobic005G111000--Sobic003G104100 Sobic009G190200 Sobic009G190200 Sobic005G111000--Sobic009G190200 Sobic009G101000 Sobic009G101000 Sobic005G111000--Sobic009G101000 Sobic003G218700--Sobic002G079100 Sobic003G218700--Sobic005G111000 Sobic003G218700--Sobic006G280100 Sobic002G234600 Sobic002G234600 Sobic003G218700--Sobic002G234600 Sobic008G017100 Sobic008G017100 Sobic003G218700--Sobic008G017100 Sobic010G262100 Sobic010G262100 Sobic003G218700--Sobic010G262100 Sobic010G138900 Sobic010G138900 Sobic003G218700--Sobic010G138900 Sobic003G218700--Sobic008G088842 Sobic001G134300 Sobic001G134300 Sobic003G218700--Sobic001G134300 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500 Sobic007G059600--Sobic002G425200 Sobic007G059600--Sobic007G159200 Sobic003G341700 Sobic003G341700 Sobic007G059600--Sobic003G341700 Sobic003G177000 Sobic003G177000 Sobic007G059600--Sobic003G177000 Sobic002G098500 Sobic002G098500 Sobic007G059600--Sobic002G098500 Sobic007G059600--Sobic005G111000 Sobic008G038200 Sobic008G038200 Sobic007G059600--Sobic008G038200 Sobic003G411800 Sobic003G411800 Sobic007G059600--Sobic003G411800 Sobic007G059600--Sobic008G080500 Sobic008G088842--Sobic010G138900 Sobic006G140600 Sobic006G140600 Sobic008G088842--Sobic006G140600 Sobic002G143200 Sobic002G143200 Sobic008G088842--Sobic002G143200 Sobic008G088842--Sobic010G262100 Sobic003G311600 Sobic003G311600 Sobic008G088842--Sobic003G311600 Sobic001G451300 Sobic001G451300 Sobic008G088842--Sobic001G451300 Sobic008G088842--Sobic006G280100 Sobic006G208400 Sobic006G208400 Sobic008G088842--Sobic006G208400 Sobic002G340200 Sobic002G340200 Sobic008G088842--Sobic002G340200 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic002G079100--Sobic008G017100 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic002G425200--Sobic003G177000 Sobic002G425200--Sobic007G159200 Sobic002G425200--Sobic008G038200 Sobic002G425200--Sobic008G088842 Sobic002G425200--Sobic006G280100 Sobic004G199200 Sobic004G199200 Sobic002G425200--Sobic004G199200 Sobic006G067700 Sobic006G067700 Sobic002G425200--Sobic006G067700 Sobic002G425200--Sobic008G080500 Sobic006G112700 Sobic006G112700 Sobic002G425200--Sobic006G112700 Sobic001G395200 Sobic001G395200 Sobic003G104100--Sobic001G395200 Sobic008G052300 Sobic008G052300 Sobic003G104100--Sobic008G052300 Sobic005G163400 Sobic005G163400 Sobic003G104100--Sobic005G163400 Sobic001G425700 Sobic001G425700 Sobic003G104100--Sobic001G425700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic006G084300 Sobic006G084300 Sobic003G104100--Sobic006G084300 Sobic009G259900 Sobic009G259900 Sobic003G104100--Sobic009G259900 Sobic009G190200--Sobic004G043750 Sobic009G190200--Sobic006G280100 Sobic002G263700 Sobic002G263700 Sobic009G190200--Sobic002G263700 Sobic007G034200 Sobic007G034200 Sobic009G190200--Sobic007G034200 Sobic008G017900 Sobic008G017900 Sobic009G190200--Sobic008G017900 Sobic009G190200--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic009G190200--Sobic009G031500 Sobic009G190200--Sobic004G038100 Sobic003G298900 Sobic003G298900 Sobic009G190200--Sobic003G298900 Sobic001G541000 Sobic001G541000 Sobic009G101000--Sobic001G541000 Sobic009G101000--Sobic006G280100 Sobic006G008300 Sobic006G008300 Sobic009G101000--Sobic006G008300 Sobic009G101000--Sobic001G482200 Sobic002G043000 Sobic002G043000 Sobic009G101000--Sobic002G043000 Sobic009G101000--Sobic002G079100 Sobic009G101000--Sobic009G190200 Sobic001G300000 Sobic001G300000 Sobic009G101000--Sobic001G300000 Sobic009G101000--Sobic003G177000
Octagon: transcription factors


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